RNA id: TU374610


Basic Information

Item Value
RNA id TU374610
length 748
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id G329560
representative False

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1870606 ~ 1878942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAAAAACTTTGCAAAAAAAACAAAAAAACAAAACAAAAAACAGTCTTCTGGAACTAATTTACAATAAATGCCAGACCTTTGTCCTTAGAGGATTTGTCCTTGTCTCTGTCTCCTCTGTCCTTTTCTCTGTCTCTGCTGCGGTGCCGGTGGCTCTTGCGCTCGGAGCTGCGGGACCTCCTCCTCTCCCTGCTCCGAGAGCGGCGCTTCCTGTCTGAGCGTTCCCGGCTGCGCCTCCTCTCTCGGTCGCGGCTCCTGCTGCGCTTCCTGTCGCGTTCCTTACTCCTGGACCTCCTCCTGTCTCTTGAGCGGCTCCTGCGGCGGTCTGACGCACGGCTGGAGTGTCTACTGTTGGAGTGACTCCTCCTGCTGCGCCTGTCCCTTTCCCGTTCCCTGTCCCGATCCCTCTCCCGCTCACGTTCCCTCTCCTTCTCACGCTCTCTCTCTCTCTCCTTTTCTCGTTCTTTCTCCTTCTCCTCCTCCTCTTTGCGTTTTTTCTCACGTTCCTCCCTTTCACGCTCCCGGTCCTCCCTCTCCTTCTTCCCTCGATCATCCTTCTCTGGGTCCTCCGAGCGCCGACGCAGCTTTTCCTTCAGTTCCTCCACCGTGGATTTGATTTTGGCATATCCCATATGCTGCTTGCCCATTAGATGGTCGTCCACTCTGGACTGAGCGTCACCGACTATGAGGAAAGCGCCACACACTTCACACACCTCCATCTGCTTCTCCTGAGCTGCAAAGCTCTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374597 lncRNA downstream 45464 1757708 ~ 1825142 (-) True G329558
TU374698 lncRNA downstream 53970 1816261 ~ 1816636 (-) True G329638
TU374600 lncRNA downstream 60867 1791084 ~ 1809739 (-) False G329559
TU374602 lncRNA downstream 60867 1791084 ~ 1809739 (-) False G329559
TU374603 lncRNA downstream 65530 1791084 ~ 1805076 (-) False G329559
TU374709 lncRNA upstream 4625 1878999 ~ 1879737 (-) True G329646
TU374710 lncRNA upstream 5745 1880119 ~ 1880529 (-) True G329647
TU374618 lncRNA upstream 8659 1883033 ~ 1886193 (-) True G329564
TU374648 lncRNA upstream 58561 1932935 ~ 1933702 (-) True G329589
TU374615 lncRNA upstream 85187 1970031 ~ 1970361 (-) True CI01000112_01967374_01971965
CI01000112_01772132_01776695.mRNA mRNA downstream 93753 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 350060 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 381105 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 430098 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 493232 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01953215_01962043.mRNA mRNA upstream 78784 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 92684 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 124745 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 126153 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 212335 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
TU374607 other downstream 60867 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 60867 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 69948 1798016 ~ 1800658 (-) False G329559
TU374646 other downstream 237284 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 583648 1286655 ~ 1286958 (-) True G328642
TU374625 other upstream 117292 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 142330 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1192946 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1193452 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1630081 3518826 ~ 3519083 (-) True G330017

Expression Profile