RNA id: TU374698


Basic Information

Item Value
RNA id TU374698
length 356
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G329638
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1816261 ~ 1816636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAACGTGAATTCCCCCGATCAACATTGATACAGATGGCATAACTGTGGAAATTAATTCAGGGGCAGAAAACGAGAAGGATTTTAACTGTGCTTTTGCGGGGTTGAGCCGATAGGAAGGAAAGTGTGAGTTGGCTGGGACTGAATCTGCGCTGCGGCGCGGCTCTGGCTTGCTGAAGGCCTGCTGCGGCGGCCTGATGCTGGAGGAAGAGGCGGTATTGCCCGAGACTCGAGCTTGGTGCTCGACTGCCTTGTTGTCCATTTCTTTATGGCAGGAATGATAGAATGGGCAGGACTAGGAAAATACACGGAAGAAGATCGCGGATGTTTCGACCGCAGTGACGAGAGTAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374600 lncRNA downstream 6522 1791084 ~ 1809739 (-) False G329559
TU374602 lncRNA downstream 6522 1791084 ~ 1809739 (-) False G329559
TU374603 lncRNA downstream 11185 1791084 ~ 1805076 (-) False G329559
TU374606 lncRNA downstream 13932 1791084 ~ 1802329 (-) False G329559
TU374669 lncRNA downstream 136062 1677972 ~ 1680199 (-) True G329610
TU374610 lncRNA upstream 53970 1870606 ~ 1874374 (-) False G329560
TU374611 lncRNA upstream 57390 1874026 ~ 1878942 (-) True G329560
TU374709 lncRNA upstream 62363 1878999 ~ 1879737 (-) True G329646
TU374710 lncRNA upstream 63483 1880119 ~ 1880529 (-) True G329647
TU374618 lncRNA upstream 66397 1883033 ~ 1886193 (-) True G329564
CI01000112_01772132_01776695.mRNA mRNA downstream 39408 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 295715 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 326760 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 375753 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 438887 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01953215_01962043.mRNA mRNA upstream 136522 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 150422 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 182483 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 183891 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 270073 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
TU374607 other downstream 6522 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 6522 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 15603 1798016 ~ 1800658 (-) False G329559
TU374646 other downstream 182939 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 529303 1286655 ~ 1286958 (-) True G328642
TU374625 other upstream 175030 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 200068 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1250684 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1251190 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 1687819 3518826 ~ 3519083 (-) True G330017

Expression Profile