RNA id: TU374606


Basic Information

Item Value
RNA id TU374606
length 450
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G329559
representative False

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1791084 ~ 1809739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGTTATTTATTTTATTTCAGTTCTAACAGAAAATCACAGCATGCTCTTGTGTGAATGAGATCAGAGAAGCAGAAGTGAGACGTCATCAGTCAGAAGGATGAAGCAGAAGGCAGAGGAGACACTGAGCGGATCTACTCTGAACACTGATCTCTCCTCAGTTCTGCAGTGACTGCAGGCTGGCCGCTCCGTGTGGCCTCACAGCTCACTGACACGCTCTTCATCCACTCCTGCTCAGAGAGAGTCAGGCTGCTGCTCCAGCTGTACAGAGCGTCCTTCTCCAGGAGCCCAGCGCTGCTCTCCTGAGACCTGCCGCTCCCGTCCACCTTCCAGCTCAGGCTCCAGTCTGACGGGAAGCCCTCGCTGGCCACACACAGCAGTGTCGCTGAGTTCAGAGAGGAGATCTCTGCACTGGACGGGGACAGGATGATCACTTTAGGAGGAGTGTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374669 lncRNA downstream 110885 1677972 ~ 1680199 (-) True G329610
TU373681 lncRNA downstream 164981 1625440 ~ 1626103 (-) True G328772
TU373647 lncRNA downstream 218495 1572366 ~ 1572589 (-) True G328738
TU373646 lncRNA downstream 231200 1559569 ~ 1559884 (-) True G328737
TU373645 lncRNA downstream 232262 1558621 ~ 1558822 (-) True G328736
TU374698 lncRNA upstream 13932 1816261 ~ 1816636 (-) True G329638
TU374610 lncRNA upstream 68277 1870606 ~ 1874374 (-) False G329560
TU374611 lncRNA upstream 71697 1874026 ~ 1878942 (-) True G329560
TU374709 lncRNA upstream 76670 1878999 ~ 1879737 (-) True G329646
TU374710 lncRNA upstream 77790 1880119 ~ 1880529 (-) True G329647
CI01000112_01772132_01776695.mRNA mRNA downstream 14231 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01517833_01520418.mRNA mRNA downstream 270538 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 301583 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 350576 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 413710 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01953215_01962043.mRNA mRNA upstream 150829 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 164729 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 196790 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 198198 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
CI01000112_02087239_02090806.mRNA mRNA upstream 284380 2086709 ~ 2090806 (-) True CI01000112_02087239_02090806
TU374646 other downstream 157762 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 504126 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 504560 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 922448 868518 ~ 868636 (-) True G328308
TU373157 other downstream 996138 794847 ~ 794946 (-) True G328309
TU374601 other upstream 6891 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 189337 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 214375 2016704 ~ 2019453 (-) True G329672
TU375077 other upstream 1264991 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 1265497 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256

Expression Profile