RNA id: TU374669


Basic Information

Item Value
RNA id TU374669
length 1518
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G329610
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1677972 ~ 1680199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAACTAACAGAGGCCGCGTCCGAAACCGTCTACTTCTCTACTATTTAGTAGGGGAAAAGCAGTAGGCGAGCGAATAAGTTTGTCCAAAGCAAAAAGAGTAGGCGAAAATTACCTGGGTGACGTACTAATTCTTGCGAGATTCGGATGTGCGCCTACTTAAAGTGCATCCGAAACCGCCTACTTACCTACTATATAATAGGGGGAAAGCAGTAGGCGAGCGAATAAGTATGTCAGAAATCTCAGTAATCATGAATGAGTAGTCGAGAAGTTCCCGGATGGCCTACTGCTTCCGCCCAGATTCTGAAGTGTTCCTCGCTGGATACTTTTATATCCCAGGAGGCCACGGGAGAGGATACGTCATAATCGAACACGGAGAAGAAAAGCGCCATGGATGTTGTCAAATCGCGGGCGAGAGCCGTGAGGGAACGGCGCGAGGCCGGTGACGCGAGTGATAACGAGGAACATTTGTATTGGATTAAATAGCTTTTGTGGTGGAGCAGGACAGGTGACAGGTGACAGTGGCATTTGTGACCAAAAAAAAAAGAAAAAAAGAAAAACCTGAAACAAAAATATAAAGATGAAATGTCCTCAGACTGGTGTGAGCACTGAGGGTGGAGAGTCACAGCAGATCCTGGGAATGGTGTAGAGCCATGGATGAGACCCTCCATCACTCCTCCTGCCCTTACTGCCTCATCTGGCCTGATGTTGATGTGGTCTCTTCATCCTCAGTGAGCCCAGAGCCAGCGACAGCATCTAAACAAAGACCAAAGGACATTGAGGATGTGATTTTGGTCAAGTTTGTTCTGCTGGTTTCTGTTCATACAATGGAGCTTCAAAAGCATCATCAAATAATGTCATGAAGCTTCTGGAAGTCAGGCTCCATTTACTGATACTGTATGAACAGAAACCAGCAGGACAAACTTGACAAATCACCTTTTGTGTTCAGAAAAACACAGGGATTGACAGCATGAAGGCGAGTAAATAATGACTGAATTTATATGTTTGGGTGAACTAACCCTTTATGCACCCAAATAGAAACTGTATGAAATATATGTATGCATTTATATTATAGTAGTACCTTGAAAAAGTAAACTTTAAGAAATAAGCAGCTTTAATACGGGTCTTGTTTTGAAGTCAATTGCTGCGTGATCTCCAGTAATATTCCACAATATCACATTTATCTCTAGTGAGAAAAACACCTCTTTGAACTAAGTGAGGAGCCAGTTACTCGTTGTTGCAAGAAGTCACTTCCACAGAGAGAGAGAGCGAGAGAGATTTTTAGATTTCAGTGTAAACTAATATAATTTGTAAACATTCATTCGGACATCACTGCAGGAGGAAATCTTTTTCCAGGTTTTTATATTTTTATTTAACTATAATAATTGCACTCAGTAAATTTAGTAACTGTTTTTTTATTATTCACTGTGTTAGAATTTTTTTATAATCTTTTGGAGATGTGAATGTTTTTCACTTTTGAAATGCATATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373681 lncRNA downstream 51869 1625440 ~ 1626103 (-) True G328772
TU373647 lncRNA downstream 105383 1572366 ~ 1572589 (-) True G328738
TU373646 lncRNA downstream 118088 1559569 ~ 1559884 (-) True G328737
TU373645 lncRNA downstream 119150 1558621 ~ 1558822 (-) True G328736
TU373644 lncRNA downstream 120488 1557244 ~ 1557484 (-) True G328735
TU374597 lncRNA upstream 77509 1757708 ~ 1825142 (-) True G329558
TU374600 lncRNA upstream 110885 1791084 ~ 1809739 (-) False G329559
TU374602 lncRNA upstream 110885 1791084 ~ 1809739 (-) False G329559
TU374603 lncRNA upstream 110885 1791084 ~ 1805076 (-) False G329559
TU374606 lncRNA upstream 110885 1791084 ~ 1802329 (-) False G329559
CI01000112_01517833_01520418.mRNA mRNA downstream 157426 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 188471 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 237464 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 300598 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01324078_01345821.mRNA mRNA downstream 332151 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01772132_01776695.mRNA mRNA upstream 91548 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01953215_01962043.mRNA mRNA upstream 272959 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 286859 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 318920 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 320328 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
TU374646 other downstream 44650 1629776 ~ 1633322 (-) True G329587
TU373529 other downstream 391014 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 391448 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 809336 868518 ~ 868636 (-) True G328308
TU373157 other downstream 883026 794847 ~ 794946 (-) True G328309
TU374605 other upstream 117817 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 117817 1798016 ~ 1809739 (-) False G329559
TU374601 other upstream 129021 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 311467 1991666 ~ 1997859 (-) True G329569
TU374741 other upstream 336505 2016704 ~ 2019453 (-) True G329672

Expression Profile