RNA id: TU373681


Basic Information

Item Value
RNA id TU373681
length 664
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G328772
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1625440 ~ 1626103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNTTAAGAGACGAGATTGCCAGAAGAAATATCGTTTTCAGAGTGAGGAATTTTTCTGACACCTCTTCTAGTGGTTCGAAGGGAGCCTCAGCTAGCCCCTCTAATACTATAGCCAAGTCCCAGGCTGGAGTTCTTGTGCGCACTGCAGGCCTCAGCCTCAGCGTGCCACGAAGGAAGCGTATGACAAGAGGGTCTCGACCCACCGAGAAACCCCCTACAGGAGCATGATAAGCCGAGATGGCTGCTACATAAACCTTCAATGTCGAAGGAGATAATCCTTCCGAGAACTTTTTTTTGGAGGAACTGAAGCACAAGGCTAATAGATGACTGGACAGGGTCCGTATTGCGTTGACTACACCAAGTAGAAAACAACTTCCATTTGTATGCATATAGCTTCCTTGTGGAGGGAGCTCTGGAATGAAGGATGGTCTCCACAACCTCGGTTGGGAGACCAGAATCTATGAGCCTTGCCCCCTCAGAGGCCAGGCTCACAGTTTCCATAGCTCTGGGCGGGGATGGAGTATTGTGCCACCCGCTTGAGACAGGAGATCCTGCCTGAGAGGAAGCTCCATTGGAGAGCCGTCTAACAGAGACATTAGGTCTGCAAACCATATCCTGGTCGGCCAGTACGGGGCCACCAGTATTAGGCTGACCCCTTCCTGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373647 lncRNA downstream 52851 1572366 ~ 1572589 (-) True G328738
TU373646 lncRNA downstream 65556 1559569 ~ 1559884 (-) True G328737
TU373645 lncRNA downstream 66618 1558621 ~ 1558822 (-) True G328736
TU373644 lncRNA downstream 67956 1557244 ~ 1557484 (-) True G328735
TU373643 lncRNA downstream 70076 1554743 ~ 1555364 (-) True G328734
TU374669 lncRNA upstream 51869 1677972 ~ 1680199 (-) True G329610
TU374597 lncRNA upstream 131605 1757708 ~ 1825142 (-) True G329558
TU374600 lncRNA upstream 164981 1791084 ~ 1809739 (-) False G329559
TU374602 lncRNA upstream 164981 1791084 ~ 1809739 (-) False G329559
TU374603 lncRNA upstream 164981 1791084 ~ 1805076 (-) False G329559
CI01000112_01517833_01520418.mRNA mRNA downstream 104894 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01486968_01488917.mRNA mRNA downstream 135939 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 184932 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 248066 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01324078_01345821.mRNA mRNA downstream 279619 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01772132_01776695.mRNA mRNA upstream 145644 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01953215_01962043.mRNA mRNA upstream 327055 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 340955 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 373016 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
CI01000112_02000588_02006313.mRNA mRNA upstream 374424 2000527 ~ 2007133 (-) True CI01000112_02000588_02006313
TU373529 other downstream 338482 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 338916 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 756804 868518 ~ 868636 (-) True G328308
TU373157 other downstream 830494 794847 ~ 794946 (-) True G328309
TU373187 other downstream 843656 780164 ~ 781784 (-) True G328332
TU374646 other upstream 3673 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 171913 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 171913 1798016 ~ 1809739 (-) False G329559
TU374601 other upstream 183117 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 365563 1991666 ~ 1997859 (-) True G329569

Expression Profile