Gene
RNA
| Item | Value |
|---|---|
| gene id | G329610 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 1677972 ~ 1680199 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU374669 | True | 1518 | lncRNA | 0.41 | 5 | 1677972 | 1680199 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000112_01517833_01520418 | NA | coding | downstream | 157426 | 1517728 ~ 1520546 (-) |
| CI01000112_01486968_01488917 | NA | coding | downstream | 188471 | 1485371 ~ 1489501 (-) |
| CI01000112_01437714_01440420 | NA | coding | downstream | 237464 | 1437457 ~ 1440508 (-) |
| CI01000112_01367862_01375489 | NA | coding | downstream | 300598 | 1367451 ~ 1377374 (-) |
| CI01000112_01324078_01345821 | SEPT9, SEPT9A, SEPT9B | coding | downstream | 332151 | 1324078 ~ 1345821 (-) |
| CI01000112_01772132_01776695 | PRPSAP1 | coding | upstream | 91548 | 1771747 ~ 1776853 (-) |
| CI01000112_01953215_01962043 | NA | coding | upstream | 272959 | 1953158 ~ 1962751 (-) |
| CI01000112_01967374_01971965 | NA | coding | upstream | 286859 | 1967058 ~ 1971965 (-) |
| CI01000112_01999128_02000283 | NA | coding | upstream | 318920 | 1999119 ~ 2000283 (-) |
| CI01000112_02000588_02006313 | NA | coding | upstream | 320328 | 2000527 ~ 2007133 (-) |
| G328772 | NA | non-coding | downstream | 51869 | 1625440 ~ 1626103 (-) |
| G328738 | NA | non-coding | downstream | 105383 | 1572366 ~ 1572589 (-) |
| G328737 | NA | non-coding | downstream | 118088 | 1559569 ~ 1559884 (-) |
| G328736 | NA | non-coding | downstream | 119150 | 1558621 ~ 1558822 (-) |
| G328735 | NA | non-coding | downstream | 120488 | 1557244 ~ 1557484 (-) |
| G329558 | NA | non-coding | upstream | 77509 | 1757708 ~ 1825142 (-) |
| G329559 | NA | non-coding | upstream | 110885 | 1791084 ~ 1809739 (-) |
| G329638 | NA | non-coding | upstream | 136062 | 1816261 ~ 1816636 (-) |
| G329560 | NA | non-coding | upstream | 190407 | 1870606 ~ 1878942 (-) |
| G329646 | NA | non-coding | upstream | 198800 | 1878999 ~ 1879737 (-) |
| G329587 | NA | other | downstream | 44650 | 1629776 ~ 1633322 (-) |
| G328642 | NA | other | downstream | 391014 | 1286655 ~ 1286958 (-) |
| G328641 | NA | other | downstream | 391448 | 1286092 ~ 1286524 (-) |
| CI01000112_00810157_00821637 | TRIM25 | other | downstream | 809336 | 808545 ~ 821932 (-) |
| CI01000112_00792970_00793455 | CQ067, CLG09H17ORF67, C9H17ORF67 | other | downstream | 883026 | 792271 ~ 793455 (-) |
| G329569 | NA | other | upstream | 311467 | 1991666 ~ 1997859 (-) |
| G329672 | NA | other | upstream | 336505 | 2016704 ~ 2019453 (-) |
| CI01000112_03068505_03072256 | NA | other | upstream | 1387121 | 3067320 ~ 3072879 (-) |
| CI01000112_03506254_03517454 | NA | other | upstream | 1824256 | 3504455 ~ 3518742 (-) |
