RNA id: AMCG00018467


Basic Information

Item Value
RNA id AMCG00018467
length 1940
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00018467
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11619373 ~ 11638050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTtctccaaaaatgtaaatagcttTTCTTACTTGCATTGCATTCTTtcaatcactttattttttcctcttttttgctttctttctccctAACTCATAATTGGAAACCCATTGGCCCGGCGACAACTCTATCTCAAATGTAGAGTCTTTATCAGCCCTTTTTCCTGACCGTGTCGAGACCTGATTTTGCTGTTGTCCTTCTAACAGATAGCCTGATGCAAAGCTGGTAGGCAGTTCTGCGTGTGATtaggggggtggggttggggggagaTTAATGTAGCTCtctatttttctttcccagAACCTTATCAGTGccactatgtgtgtgtgtgcgtgtgcgtgtgtgtgcatagtGCATTTCCACGTGTCTATGTCCATGCCAGTCTAAATTACGCTCCCCTTCCTGACGAGATGTCTGCGACCGAGTCCAAGATAGAACTATGCAACATGTCCACTGTTTCCATCGCTGAACCAGATAAGGAGAAAGTTAGCTTCCACCTGAAGCCCAACTGGTATGAGAAGTATGCCCAGCCCTGCATTGCTGAGCTCCTGGGATCAGCGCTGTTCATCTTCGTGGGCTGCTCCTCGGTCATCGAGAATGTGGAGAGCACGGGGAGGCTGCAGCCCGCTTTGGCCCATGGTTTGGCGCTGGCCATCGTCATCGCTGTCCTGGGGGAAATCAGtgggGGGCACTTCAACCCAGCagtgtccctgtctgtctacctgATCGGGGGTCTCAACATAATCCTGCTGCTGCCCTACATGGTGGCCCAGTGCTGTGGCGGGCTGCTCGGAGCTGGTCTGGCTATGgCTATCTCAACACCAGTGAGTTATGACAACGCCACGGGCGGTGCTTTCAATGTGGTCAAGAGCAACGAGCAGATTTACGCGGCCATCATTGCAGAGATAGTGATGACTCTGTTCCTGACCATGGTGGTGTGCATGGGCGCCGTCAATGGAAAGAGCCGCAGCCCCCTGGCCCCCCTGTGTATCGGCCTGACTGTGGCCGCCGACATCCTGGCAGGAGGGGCTGCGTCCGGTGCCTGTATGAACCCTGCCCGTGCATTTGGGCCAGCTGTTGTGGCAAACTACTGGGACTACCACTGGATCTACTGGGTGGGGCCCATGGCTGGGGCCCTGTTCACTGCCTTCTTCATAAGACTGCTGTTGGGTGACAAGGACAAGCATGAACTCCGCAACTTGGAGACCACCTTCCTGGAGCATGCCGAGAAGCCCACCAGGACCCCCAACACCTTCGAAAGGCTTGTCCAGCCCTGTGCGGCTGAGCTGGTGGGCACCATGTTCTTCGTGTTCATTGGCTGTGTGTCGGTCATCGAGAACGTGGAAGCTGCCGGGCGCCTTCAGCCTGCGCTGGTGCACGGCTTGGCAGTGGCCATTATGGTGGCCATCATGGACAACATCAGTGGCTCCCACTTCAACCCCCCGTTCACTATTGCCATCTTCTTGGTGGGGGGCATGAAATTCATCATGGTTGTCCCCTACCTGGTCTGCCAGGTGATTGGAGGAGTGCTTGGAGCAGCAATGTCAAAGGCCATGACATCAAAGGAGCACTACTTTAACGCTACAGGAGCAGCCTTCACCATTCTGAAATCAAATGACCAGCTAGCAGGGGCTATTTTCGGGGAGGTGGCAATGACATGCCTGGTCACAATGGTGGTGCTGTTGGCAGCAGTCAACAAGAGGAGCAAGACTCCCCTGGCACCGTTCCTGGTGGGCTGCACGGTCATCATAAACGTCTTGGCTGGGGGCGACGTGTCCGGTACCTGTCTGAACCCGGCCAGAGCCTTTGGCCCCGCTGTGCTCACCAGTTACTGGACGTATCACTGGGTATACTGGGTGGGCCCGATAGGGGGCTGCCTGGTTGCAGCAGCACTGGTCAGACTGCTGCTGGGAGATGAGAAGATCCGTCTTATCATGAAA

Function

GO: NA

KEGG:

id description
K09869 AQP8; aquaporin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145884 lncRNA upstream 203635 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 207303 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 363208 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 363208 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 535584 11061569 ~ 11083789 (+) True G116374
TU145974 lncRNA downstream 90759 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 488400 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 500952 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 500952 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 634539 12272589 ~ 12273496 (+) True G116653
AMCG00018468 mRNA upstream 13021 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018464 mRNA upstream 92578 11515955 ~ 11526795 (+) True AMCG00018464
AMCG00018462 mRNA upstream 105031 11488147 ~ 11514342 (+) True AMCG00018462
AMCG00018465 mRNA upstream 166899 11450500 ~ 11452474 (+) True AMCG00018465
AMCG00018463 mRNA upstream 183173 11427683 ~ 11436200 (+) True AMCG00018463
AMCG00018470 mRNA downstream 39712 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018469 mRNA downstream 117784 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018471 mRNA downstream 217470 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018476 mRNA downstream 318179 11956229 ~ 11966330 (+) True AMCG00018476
AMCG00018475 mRNA downstream 329839 11967889 ~ 11987054 (+) True AMCG00018475
TU145312 other upstream 2006455 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2054969 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2377558 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2417787 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2924654 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 328197 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 877753 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1615293 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1669848 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2381878 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile