RNA id: AMCG00018471


Basic Information

Item Value
RNA id AMCG00018471
length 942
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00018471
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11855520 ~ 11900247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGATGTGTGATAGAGGCGTCCAGATGTTAATCACCACGGTGGGGGCTTTCGCCGCTTTCAGCTTGATGACCATAGCGGTCGGGACGGACTACTGGTTGTATTCCCGGGGCATGTGTAGGACTAAATCGGCCAACGATAACGAGACCAGTAGGAAGAACGAAGAAGTGATGACCCACTCTGGACTGTGGAGGACCTGCTGTCTTGAAGGGACGTTCAGAGGCGTGTGTAAGAAAATCGACCACTTCCCAGAGGACGCCGACTACGAGCAGGACGCGGCGGAGTACCTACTGCGGGCTGTGAGGGCGTCCAGTATCTTCCCTATCCTCAGTGTCGGGCTGCTGTTCATGGGCGGCCTGTGCGTGGCGGCCAGCGAGTTCTACAAGAGCAGACACAACGTCATTCTCAGCGCCGGGATTTTCTTTGTCTCTGCTGGCCTCAGCAATATAATCGGAATCATCGTGTACATATCGGCCAACGCGGGCGACCCGGGCCAGAGCGACTCCAAGAAGAGCTACTCATACGGCTGGTCCTTCTACTTCGGGGCGCTGTCCTTCATCATCGCCGAGATGGTGGGCGTCATCGCCGTGCACATGTTCATCGAGAAACACCGGCAGCTGCGCGCCAAGTCCCGCACCGAGCTGCTCAAGAAGTCCGCCTTCAGCCGCATTCCCAGCTACCGGTACCGCTTCCGCCGGCGCTCCAGCTCCCGCTCCACCGAGCCGCGCTCCCGGGAGGCCTCGCCCATGGGCAAGGTGTTCACTGGCCCGGCCTCCACCGACATCTCCATGTACACCCTGTCCCGGGACCCCTCCAAGGCCACCATGGGCACCCTGCTCAACTCTGAGAGGGAGTTCCTGCAAGTGCACAACTCCGTCCCCAAGGACTTCAAGGACAGCCTGCACAGTAACCCTGCCAACCGTAGGACCACCCCTGTCtga

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04868 CACNG3; voltage-dependent calcium channel gamma-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145974 lncRNA upstream 37431 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 439782 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 443450 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 599355 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 599355 11252419 ~ 11256165 (+) True AMCG00018449
TU146048 lncRNA downstream 226203 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 238755 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 238755 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 372342 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 378183 12278430 ~ 12278840 (+) True G116654
AMCG00018469 mRNA upstream 38472 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018470 mRNA upstream 177393 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018467 mRNA upstream 217470 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018468 mRNA upstream 249168 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018464 mRNA upstream 328725 11515955 ~ 11526795 (+) True AMCG00018464
AMCG00018476 mRNA downstream 55982 11956229 ~ 11966330 (+) True AMCG00018476
AMCG00018475 mRNA downstream 67642 11967889 ~ 11987054 (+) True AMCG00018475
AMCG00018478 mRNA downstream 172858 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018477 mRNA downstream 251142 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018481 mRNA downstream 286443 12186690 ~ 12187328 (+) True AMCG00018481
TU145312 other upstream 2242602 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2291116 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2613705 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2653934 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 3160801 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 66000 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 615556 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1353096 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1407651 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2119681 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile