RNA id: TU144385


Basic Information

Item Value
RNA id TU144385
length 902
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G115277
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5747458 ~ 5748359 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGATCACTCCTGAGTTGTCCATACTGGGTCGACACCCAAAATCCTCTGCGATCCTCCAAACTAATGCACGGCTCCTTCGGATATCTGGCCTGGAATTTCTTCAAAAATCCTCCTTCGAAATCCGCTATGACCCCGTCCATGTCGACCAGAACTCGCAACCTTTTGCTTGAAGAACTTGACGCATGCATTTTGTCCGAAGTGTGAATATGCTCAGAGACACATCTGATCGGTGTACAAACCAGAGCCCTGTCCGCCTTGAGCAGATGCACAATTCGagcaaataaaaccattattGTCATATATTACGTACTTTATAGTGCAACCGATAAGAAGGCTCAAAGGTCCACCTAAAGAAGTTGCAAATTAAATACGCCTGCTGCAACGCCTTGCCCCTCAAACGGATGGCTTGCATTTAAATGCTAGGTAATTCTCGAACTCCTTAATCTAAAATTCGAAAAGGAATCCTAAACAACATAAGCAATATGCTGTTCTATTATGATTGCTATTTTATGATCGGCCAAAGCTATTGACAGCTGGCTTGTGCACGCCCATCAGTGCTTTCCCCTGCAGCCAAAATGTTCAACCTTTACAATGTCTGTGTCTGAAAACCCGATCTTTGCATTCGGAGCTTCTGCACAAAACAGTGTCCATTTTCACATATACATAGAAAGGTGTGTGTGGACTTGTTTACAACAGTGCAGATGTGCAGTTCTGTCTCAGGCCCGCAGTGCTGCTGTCATCACAATCGGTGtgacactgcaaacacacacacactggagctCAGAGCGGTTCAGCTCGTAACCTTTTGCAAAACAACTACTGCGGAAACCCGGAAGCACTAGGTCggtcatttttttgttttgtgcggCATTCACtcttaaatgaaaacacaccaGTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144336 lncRNA downstream 139389 5607833 ~ 5608069 (-) True G115243
TU144306 lncRNA downstream 397828 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA downstream 400045 5345894 ~ 5347413 (-) False G115219
TU144282 lncRNA downstream 402324 5344487 ~ 5345134 (-) True G115202
TU144254 lncRNA downstream 443029 5300263 ~ 5304429 (-) False G115183
TU144386 lncRNA upstream 1424 5749783 ~ 5750043 (-) True G115278
TU144390 lncRNA upstream 1733 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 1926 5750285 ~ 5753921 (-) False G115279
TU144388 lncRNA upstream 1926 5750285 ~ 5754022 (-) False G115279
TU144448 lncRNA upstream 297671 6046030 ~ 6046618 (-) True G115332
AMCG00018262 mRNA downstream 1754 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 134983 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 380705 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 392535 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 404474 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018264 mRNA upstream 34717 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 46158 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 133187 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 319944 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 380354 6128713 ~ 6155791 (-) True AMCG00018289
TU144300 other downstream 380704 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 443029 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 443070 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 459585 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1095846 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 202062 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 870116 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 889983 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1994859 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3491453 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile