RNA id: TU45249



Basic Information


Item Value
RNA id TU45249
length 1036
RNA type TUCP
GC content 0.46
exon number 3
gene id G36212
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37513987 ~ 37516027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCAAATAAACAAGAATTGTGCTCAATGCAGTAAATGAAAATCAGGTTTGATTGAATATACTCTTCAATAGAAACCACATCTGCTTGTGTATGAAAACATCCTTCATGAGCTCATAATGACTTGAACTGTTTCCTGTTCTTCATCCATTGAGgattttcatattaaatgtcTAACATTGTAGTCCTCCTGGACCAGGAATAAATAGTACTATTAACATAATATTACTACTTACAGTGCTCTGTTGTTGTGTTCAGGTGGTGTGCTGGGTGGATAAGGCGGAGGCTCCAGCCAGTGCAAGGCCCACTGTGCTGCAGACTCTGGAGGTCACTCTGCAGGAGTGGGGCTTCACACAAGACGACCTCACTGCCATTCAGCAGATCATTAAACAGTGGGCTGAGGCAGctatgcaggctgtcatggacTACCAGTCACAGCTCTCAGACCAGGACAAGGGTGGAGCTGGAGCTCAGACTGATCTGATAGGGGTGGAGTTTGCCCTGATTCTGCAGGATGGAAAACTGCACCCTCTTCTCCTGAGTTTGACTGCCCACCACAGAGGGGTTTACAGCACAGCCTTCAGTCTCCTGATGCTCCCAAGGTTGGCCCATACTGTGGAACCCCTCCTACAGACCATGTGCCAAAGAGCCCACTCCTTCTTCATAGCCGGGAAGACAATACTCGTAATCGGAGCAGGAGGGTCCCTGAAGATGTCCGTGTGGCACACGGCCAAGAAGCAAAACATCAGGatAATCTTGGTAAATCCCGAATCAGATCACCCTGCAATCCACCTGGTGTGGAAATTTCTGCATTACAATTTTACTGATCACTCAGAAGATGAAGCTCATTCCCGAAATATAGCCAGTATGATACGTGAGTCAAACCTGAATATCAACGGCTGCTTAACATTTGTTTGTAACTGTTCTGTTCTGACATCTATTCTGTGCAAAGAGCTAGGTCTCCCTAGTAATGGTGTTGAAATGATCAACATTGCCAAAAAGAAAAGTCACACCCAGCAGCACTTGGGAAGAGTTGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45218 lncRNA upstream 124025 37388328 ~ 37389962 (+) True G36189
TU45141 lncRNA upstream 273493 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 309025 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 453343 37060418 ~ 37060644 (+) True G36106
TU45105 lncRNA upstream 567489 36946101 ~ 36946498 (+) True G36098
TU45442 lncRNA downstream 1113181 38629208 ~ 38632178 (+) False AMCG00019708
TU45485 lncRNA downstream 1339812 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 1566083 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 1742004 39258031 ~ 39258546 (+) True G36464
TU45633 lncRNA downstream 1876465 39392492 ~ 39430557 (+) True G36497
AMCG00019691 mRNA upstream 94440 37409768 ~ 37419547 (+) True AMCG00019691
AMCG00019689 mRNA upstream 107556 37399600 ~ 37406431 (+) True AMCG00019689
AMCG00019681 mRNA upstream 135308 37372379 ~ 37378679 (+) True AMCG00019681
AMCG00019680 mRNA upstream 142731 37365974 ~ 37371256 (+) True AMCG00019680
AMCG00019676 mRNA upstream 300468 37178359 ~ 37213519 (+) True AMCG00019676
AMCG00019693 mRNA downstream 88486 37604513 ~ 37606380 (+) True AMCG00019693
AMCG00019695 mRNA downstream 90433 37606460 ~ 37607720 (+) True AMCG00019695
AMCG00019694 mRNA downstream 92048 37608075 ~ 37619035 (+) True AMCG00019694
AMCG00019696 mRNA downstream 108927 37624954 ~ 37625467 (+) True AMCG00019696
AMCG00019690 mRNA downstream 163375 37679402 ~ 37739848 (+) True AMCG00019690
TU45071 other upstream 1214440 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 1450142 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 1450142 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 2662664 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 5121011 32330637 ~ 32392976 (+) False AMCG00019609
TU46002 other downstream 5040513 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 5444629 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 5745867 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 5814265 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 6537047 44053074 ~ 44056603 (+) True G37105

Expression Profile