RNA id: TU44999


Basic Information

Item Value
RNA id TU44999
length 2220
RNA type TUCP
GC content 0.37
exon number 7
gene id AMCG00019662
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36046477 ~ 36063850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcccgcccgcccCTCACTGCCCCTGTCCCGCACCATGGCGTCCAGCGAGGAGGACGGCTCGGTCGAGGAGaaggaaagcaagaaaaaaggCAGAAGTGCCCTCGCCCTCACCTGGCTGACGTTTTATAACATCGCCATGACCGCCGGGTGGCTGGTGCTGGCTGTAGCAATGATTCGTTTTTATATAGAGAAAGGGACACACAAGGGTCTGTACAAAAGTATATCAAGGACACTCAAGTTTTTCCAGACATTTGCATTGCTTGAGgTTTTCCATTGTGCAGTTGgaATGGTGCGCACCTCTGTGATTGTGACTGGGGTCCAAGTGTGTTCAAGAATCTTCATGGTTTGGTTCATTACAAACagcatcaaacagATACAACCTGTTTATTGTCCTGTACCCGCTTGGAGTGGCCGGTGAAATCATGACCATTTATGCTGCTCTGCCGTACGTCCAGAAGTCCGGCATGTTTTCCATGAGGCTTCCCAACAAATACAATGTCTCTTTTGACTACTACATCTTCCTTATCCTTGTCATGATCTCATATATACCACTGTTTCCCCAACTGTATTTCCACATGCTCCGTCAGAGGAGGAAGGTGCTTCACGGAGAGGTGATTGTTGAAAAGGACGATTAGATCACCTTTTCGCAGGATAACAAGACTGTACAGCTAAGCCAACATGACCCACAAAAGGAGCTAAAGTAACAATCATGGAACAAGAATAAACAGCTGTGCATGAACCAATGTGgattcttttatttctttatcacCACATAACATCAGTGCATTAAATCAGTAACTCTAAACAGCACATACTCATTTGAAGGAAAAACAGGAGTGGCAATTTTACTCTGTTCAGTTATGTGGTGCACAATATGAATAGAAAAACAGCAGAGatcattacaaaatGCACTTCTAACCAAATATGAAACATGTTCTGTACAGACTTGTACAGAATTCTAATTTGATCTAGCACACCGTGTAGCATTAGCTGTTTTAAGCTCATTTACTGTTATTAACTAAAATGAACATTAAGTGTCATGAACTATCTGAGAAATTAAAACtaatgtgttattgttgttttggaaTAAAGCTGTAAATCTTTAGGAACATGTTACATGGATTTTAAACTACAGGCAACATTTTGATAGTGAATGTCCTGTCTGGTTTTCTTTCTGCTTCCTGTAGATGTTaggattttgtgttttgtttattttaattttgaagttATGGATCAAAATTGAAATTTGATGTGCAAATTGAAAGGGATGGAAAAATGATTATTCACACAGAGATTAATACATTCATGTGCATATGAAAAGAACCTAAGAACGAagtgttttcagttattttctgaatcATTGCTGACTTAAGGAATGTTGGTTCCAGACGTCTGTTACAGGATTTTCAAAATGGTGCTTTTTTTCACGTCAGTTAAATTATTTCCATCTTCTGTGCAgctaattattaaaaaataaagaaatgaagacCATGTAGACATGATTAAATACCAGGATATATACACTTACATATAATTGAACATGAACCCTTAAGGAACTATCGTTTCATGTCATGCACTGCTTGTCAATGgtcttattgattgattgattggataTATGCTTTGAATCAAGGCTAGCGGTAgaaaagaagtaaaaaataaatacatttgagaacATATATATCAGCCtcattcaatatatttgttatttgtggCGTTAAACTTCAAAATAGGCTTCTTGCTGTAAAACTTGTAAGAAcgattttgaataaaataaagaggtAGACAATTGTAGGCAAGAGTAGTTTGTTTCATAGCATGAGCATTGGAGGGATATAATTTTTAATCTTGAGGTGGTTCAAAATCTGAAAGTGTGAATTGACCTTGAAGGGAATGGAAATGTGAATTGTGTTGTTCCCTAAAATGTAATAGTAGTGCTTATATGTGGGCAGGGTactttgcaaataaaatacaataacaacaaacagaAGGTAAGATTAGTAAGTAcagaattaaaattacattatattgttttatgtcttaaaaaaaaagaaaaaacatgtattggtattgtaaagtaaacatttttatgCATGAACGTTGCACATGAAGCAAACCTATTGTAGCTTTGCAGTATATTTTGTACAGTGTATTTGCctaattaaatgcttttaggTACCCTAGAAGTCATATAACTTGCTATTAAGTAAAACTGCgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44903 lncRNA upstream 331487 35714414 ~ 35715003 (+) True G35933
TU44845 lncRNA upstream 947573 35098707 ~ 35098917 (+) True G35880
TU44839 lncRNA upstream 960540 35077039 ~ 35085950 (+) True G35874
TU44780 lncRNA upstream 1236449 34809659 ~ 34810041 (+) True G35820
TU44776 lncRNA upstream 1306371 34739889 ~ 34740119 (+) True G35816
TU45029 lncRNA downstream 95969 36159814 ~ 36160156 (+) True G36033
TU45043 lncRNA downstream 141583 36205428 ~ 36208506 (+) True G36046
TU45051 lncRNA downstream 162193 36226038 ~ 36227349 (+) True G36054
TU45094 lncRNA downstream 563845 36627690 ~ 36628070 (+) True G36088
TU45100 lncRNA downstream 847696 36911541 ~ 36911979 (+) True G36094
AMCG00019660 mRNA upstream 314232 35716345 ~ 35732258 (+) True AMCG00019660
AMCG00019653 mRNA upstream 672207 35351443 ~ 35374283 (+) True AMCG00019653
AMCG00019651 mRNA upstream 898199 35106126 ~ 35148291 (+) True AMCG00019651
AMCG00019641 mRNA upstream 1199718 34844882 ~ 34846772 (+) False AMCG00019641
AMCG00019640 mRNA upstream 1336567 34685047 ~ 34709923 (+) True AMCG00019640
AMCG00019669 mRNA downstream 123207 36187052 ~ 36190796 (+) True AMCG00019669
AMCG00019670 mRNA downstream 133206 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019671 mRNA downstream 228507 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019677 mRNA downstream 1027178 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019676 mRNA downstream 1114514 37178359 ~ 37213519 (+) True AMCG00019676
TU44804 other upstream 1195167 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 3653514 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 3719214 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 6741844 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 12350689 23672125 ~ 23695801 (+) True G34511
TU45071 other downstream 228501 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 1450142 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 6492695 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 6896811 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 7198049 43261894 ~ 43270885 (+) False AMCG00019758

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU298896 False 1890 TUCP 0.43 6 NC_053133.1 18763438 ~ 18772800 (+)