RNA id: AMCG00020805


Basic Information

Item Value
RNA id AMCG00020805
length 1065
RNA type mRNA
GC content 0.65
exon number 5
gene id AMCG00020805
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34023019 ~ 34027562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTGGGGTCCGCCGTCGTGCCGTACCCTGTGGTGCAGTATAGTGTCGCATACATgATGGAGTGCCTCTCCACGCCCCATAACATCCAGATCACCGGGGTGACGTGCGACTCGTTCCGGATCTCCTGGGAGTCGGCCCCCGAGGACGCCGGGAGGGCCACGCACTTCTTCATCGACCTGAGCCGCAAGGAAGCCAAGGACCCCAACCGCTTCAAACACAGGGACGTCCCGACCAAGCTGGTGGCGAAGGCGGGGGCCCTGCCGCTCACGGTGCGGGGGCACTGGTTCCTCAGCCCCCGGACAGAGTACTGCGTGGCCGTGCAGACCGCCGTGCGGCAGCCCGACGCCGGGGACTACCTGGTGTCCGAGTGGAGCGAGGTGGTGGAGTTCTGCACTGGAGACTACGCAGTGGATcacctgcagcagctccaggaGAAGGCCCAGGGCGTGTCTGGGAGAATGCTCCGGTTCTCCGTGTTCTACCGGAACCAGAACCCGGAATACTTCCACCATGTCAGGCAGCAGTGTGGCGGGGTGATGCCCCCCTCCCTGAAGGACAGCAGCGGCAGCCATGGCTCCCCCATCAATGGGGCCCTGCGCGGGCTGTTCTTCAGCTGCAACACGGAGTTCGACACGGGGCTGCCCCCCAACGACTCGCCCTACGGCCCTGTGCGCTTCCAGGTCCCGGCGGGGCTGCTCCTGAACCCGGCCACGCGCCTCTACTTCGCCGACTTCTACTGCATGTACACCTCCTACCACTATGTCGTGCTGGTGCTGGCCCCTAGAGGCTCGGAGGGGGATATCTTCTGTCAGGGCTGGCTGCCCGAGCTGGACACTGCCAACAACCCCTTCCTGATGTTTCACCCCCCGCAGCAGGAAGGGGGCGAGGCGGCCTACTGGCACGCCCATGACGTCATCCTGGAGGTGCTGTACACCGAGCCTGTGGCCCTGGACCAAGGCATCCTGGGAGAAATCAGCGGACACCAGCTGATGAGTCAGACCACCGCCGATGCCAAGAAAGACCCGAGCTGCAAGCTGTGCAACATCAGTGTGGGGCGCTGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82289 lncRNA downstream 40993 33981790 ~ 33982026 (-) True G65815
TU82287 lncRNA downstream 60828 33961177 ~ 33962191 (-) True G65813
TU82240 lncRNA downstream 170393 33805701 ~ 33852626 (-) True G65776
TU82324 lncRNA upstream 22434 34049996 ~ 34051069 (-) True G65844
TU82325 lncRNA upstream 24898 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 89044 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 187495 34215057 ~ 34215559 (-) True G65867
TU82355 lncRNA upstream 191197 34218759 ~ 34220010 (-) True G65872
AMCG00020804 mRNA downstream 27294 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020798 mRNA downstream 99584 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 815243 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 866458 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 1042494 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020803 mRNA upstream 29392 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 85081 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 181347 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020813 mRNA upstream 189334 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020810 mRNA upstream 194784 34222346 ~ 34230487 (-) True AMCG00020810
TU82216 other downstream 653914 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1131526 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1366000 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1412324 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1657877 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 194753 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 781212 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 835057 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1122006 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1135252 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071842 True 1337 mRNA 0.54 5 NC_007119.7 52453146 ~ 52473054 (-)