RNA id: AMCG00020845


Basic Information

Item Value
RNA id AMCG00020845
length 452
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00020845
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34890247 ~ 34891705 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAGATGGCGGCGTCCTTGTGCTATGGAGGTGTCGTTCTCTCGaaCCGTGCTGCGCGGGTGCGAGTGGGGAAGGGCGATAGGCCGGTGACATACGAGCATGCCCTGCGCCCCCATGACATCGGCCACCGGAAGGGCTGGCTCTCCCAGCACACCAGTAACCTGTGCGGGGAGGAGGGCGCGGCGGACCGGGTCGTGGAGGACGTGTTCGTGCGGCGCTTCATCTTCGGCACGTTCCACGGCTGCCTGGCCAACGAGCTCATCATCAAGCGCCGCGGCAACCTGCTGCTCATCTGCGCCCTCATGCTGCAGAAGCTGCCGCCCCAGAAGTTCTACTTCCTGGTGGGCTACACCGAGGCGCTGCTCTCGCACTTCTACAAGTGTCCCGTCAAGATGGAGGTGCAGACGCTGGAGCAGCCAGTCGTGTACAAGTACCTCTGAGCTGCGGCGGCc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17403 MRPS24; small subunit ribosomal protein S24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82573 lncRNA downstream 49005 34838761 ~ 34841242 (-) False AMCG00020837
TU82526 lncRNA downstream 140097 34749444 ~ 34750150 (-) True G66004
TU82525 lncRNA downstream 140918 34749127 ~ 34749329 (-) True G66003
TU82523 lncRNA downstream 142886 34746941 ~ 34747361 (-) True G66001
TU82465 lncRNA downstream 374349 34514368 ~ 34515898 (-) True G65957
TU82629 lncRNA upstream 7079 34898784 ~ 34942966 (-) True G66087
TU82668 lncRNA upstream 111873 35003578 ~ 35077562 (-) True G66123
TU82675 lncRNA upstream 187973 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA upstream 187973 35079678 ~ 35081867 (-) False G66126
TU82674 lncRNA upstream 190260 35081965 ~ 35095653 (-) False G66126
AMCG00020837 mRNA downstream 48924 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020838 mRNA downstream 63618 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020836 mRNA downstream 75953 34808604 ~ 34814294 (-) True AMCG00020836
AMCG00020839 mRNA downstream 99191 34787271 ~ 34791056 (-) True AMCG00020839
AMCG00020831 mRNA downstream 119605 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020849 mRNA upstream 118186 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020854 mRNA upstream 194112 35085817 ~ 35099957 (-) True AMCG00020854
AMCG00020851 mRNA upstream 209302 35101007 ~ 35111425 (-) True AMCG00020851
AMCG00020852 mRNA upstream 232710 35124415 ~ 35127755 (-) True AMCG00020852
AMCG00020853 mRNA upstream 271830 35163535 ~ 35167869 (-) False AMCG00020853
TU82585 other downstream 24942 34862619 ~ 34865305 (-) True G66054
TU82568 other downstream 76078 34808774 ~ 34814169 (-) False AMCG00020836
TU82397 other downstream 650550 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1521142 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1998754 32886364 ~ 32891493 (-) True G65679
TU82718 other upstream 257863 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 271109 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 787727 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 922264 35813969 ~ 35819830 (-) True AMCG00020887
TU83060 other upstream 1084059 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile