RNA id: AMCG00020836


Basic Information

Item Value
RNA id AMCG00020836
length 2819
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00020836
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34808604 ~ 34814294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAACACCCCCCTCCTCCACAACACAGCGGTAATGGCCGCCCTGCGCTAGGGGTCGCTGTCGCGATGGCAAGGGGGGCGCCGTGCGCGGAACTCAGAGTGGAGACCGTGTTTGCAGGGGAACATAATAAGCGCTGCAGCAGCCCGACATTCTGGCAGTTTCTCGACCGcggagtttgttttgtttctgtgtttgtgtttttctccgGATCCCCGGCGTGTTTCAGCTGCTGCCGCCCCGCAGGCTGTGTGTCCAGTAATGGTGCGAAGCAGGAGTCGCTCTCCACCGAGACGAGagAGACGTCGTTCTCGTTCTGCCTCCCGAGAGCGCGAGAGGCggcggagagagagggagcgctCTCGCTCTCGTGACCGGGACAGGAGGAGGTCTCGCTCCAGGTCCCCACACAGGAGGCGCTCCAGGTCCCCCAGGCGCCACAGGTCGTCCTCCCTGTCTCCACTGAGGGCGAAGGACCGGCGGGATGACGACAAGACGGACAGCAAGCCGGCGAAGGAGCACGAGATCTCGGaGGAGGACCTGCAGGGGAAGACTGAGGACGAGATTGAGATGATGAAGCTCATGGGGTTCAGCACCTTCGACACAACCAAGGGAAGGAAGATGGATGGCTCGGTGAATGCGTTTGCTGTCAACGTCTCCCAGAAGAGGAAATACAggtctgtgtttgtctgctacCCGAGACACAGATTTAAACAACCACCCCCCCCCGTTCAGTCCATGCTTGACAAGTTGCAGGCTTGTGAATAAGGCACCTCCAAGTCCTGGATGCTTCAAGGTTGTTTAAAGTGAATCTATGTAAGGACAGGCGCACGCTGGGTTAAAAATAACCCAGAATATAATCACCATCTGCCTGATTGCTGCCAATCTGTACAAGAACCTGTGCTTCTAAGGCCTGAACAGCACCAAACGGCTGTACCCTGGATGGCTGCCCTGTGTGCTAGGTCTGCAGGCCTCGTGCGTCTCCTGTGCAGCTCAATGGAGTTTAACCGAAGTTTGAGAGAAGGACGACCCCAATTCCGTGTCTGGTGAATATAGCGGGCGGTCGTCGCTCTGTGCCCGAGCTCTGCTCACTGGTCACCTCTGCAGTGTGCCATGCTGTACCAGCAGCGACTGCATGTGAGTCACGGGCGCTGTCCCTGACAGGACAACAAGATCGATCGCTCCCACCCCGGCCCTGCTTACGCAGCCTGTTCGCTTTTGTAATGCAGCTGTACTGTAGCATAAGCTTTCCTTGTGCCGACTCTGGCCTTTGATATCCGCTACGTGCCTCCCTGACCTGCATATATGAGTGTGCGCAGTCAGTCCTTTTTTCTGTTCCTTCCCCTGCCAATTCTGTACTTCCTATTCCCCCCGTGCCCGAGTATACCTCCTGCGCCGCGTGAGAGCTGAGGTTGGCACAGAGACCGTGTGAGGTGGAAGGGGAGACTCCGGAGAGAGAGGCAGCCAATCGCAGGGCTTTGGAATGTCCTCTAATCAGCAGGTGTTCCATTGCAGGGAGAGCAGTCATCCCATTGGTGGAAAATGATGTAATGTGTTAGAGGGGGGAAAATAATGatgtaatctttcttttttttcctagGCAATACATGAACAGAAAAGGTGGATTTAACAGACCCCTGGATTTCATTGCTTGAAGAAAAAGAACCGGACTGTGTGCAACAAGGTCaccaatgtttttctttcctgcagATGTTTGTAAGATTTCCAGTGCtagagttgtttatttttatttttttttattcccccctccTGCATATTTATGGAAATTGCAGTCTTGGGAGCCGGTCCAGGCTGACTCTAGGTGATCTaaaatgcagattattttttcccagtCCACAACAATACAGCGTTAATGCCTTGCCCTACAGATCCACCTTTACCCTGTGCCAGCAGACCCCCCTGTGTAGCGCACTGCGGACTGCAAGGTTGACATGCACAGTCCCCCAGAGCGGCCGTGTAGATCACTTTCCACACGGCCAGTGTCCCTGTAAAGTAGTGTGGCTGTTTGTATTGCCCTatgaatttgcttttttttccctggtTCGTTTTCTCAGTGAATGGTAGTGCCAGTGTGGGCAGTGTGCTGCAGGGGGCGTTTGCTTGGTGGTGTTGGTTTTCAGGGCAGTTTGTTGCAGCTGCTCCTCAGGGTAGTTCAGGTGAAAGGTTTAATTagttgtattttgcatttctgcTCCTAAAGGAAGGTGTGTGAGGCATTGGAGGGCAGCTGGGGCAGTGAGTCACAGTCCAGGGCAGGTGCAGAACAGCAGTGCCTCCTCAGTCCTGCCTGGCTCACCTCCACTCACCTTCCAGCTCAAACAGCCAGAGTCCGTCTCTTCTGCATGTGTGTCAAAGTTATCTGCAATTGTTTTTGCAGAACACAGGTTTGTTTCCTGTTCAAACAGCCAGCCACCCCCTTTCACCTCCCAGATGATCTGTTTTGCATAACTTTAGTTTCCTCTGCAGGACAGCTCCCAATGTATTACAACAGCAGAATTTACTCtgacttgtgtttgtgttctggctctgattatttttacttcatgtaATCCGCATAAAGAAGCCTGATCATTTCCATTTATGTAACTGCGGTATTTCGTAAGtcttgatatttaaataataaaaacccttGTATGAGTCTAGTCTGCTTaagatattttctttattttcaaccACATGCCTTGCACAATTTGAAGCACAAATGGCAGCGTCCTGTGGTGTCACACCCTGGCTGAATAGAATGCGCTTTCTTCATTACTGGTCAAAACCAGTCTAATAAACAGTCTCCTTAAAGCAATTAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12846 SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82526 lncRNA downstream 58454 34749444 ~ 34750150 (-) True G66004
TU82525 lncRNA downstream 59275 34749127 ~ 34749329 (-) True G66003
TU82523 lncRNA downstream 61243 34746941 ~ 34747361 (-) True G66001
TU82465 lncRNA downstream 292706 34514368 ~ 34515898 (-) True G65957
TU82420 lncRNA downstream 388414 34416657 ~ 34420190 (-) True G65915
TU82573 lncRNA upstream 24467 34838761 ~ 34841242 (-) False AMCG00020837
TU82629 lncRNA upstream 84490 34898784 ~ 34942966 (-) True G66087
TU82668 lncRNA upstream 189284 35003578 ~ 35077562 (-) True G66123
TU82675 lncRNA upstream 265384 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA upstream 265384 35079678 ~ 35081867 (-) False G66126
AMCG00020839 mRNA downstream 17548 34787271 ~ 34791056 (-) True AMCG00020839
AMCG00020831 mRNA downstream 37962 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020833 mRNA downstream 53290 34751379 ~ 34755314 (-) True AMCG00020833
AMCG00020834 mRNA downstream 66933 34729127 ~ 34741671 (-) True AMCG00020834
AMCG00020832 mRNA downstream 80240 34719704 ~ 34728364 (-) True AMCG00020832
AMCG00020838 mRNA upstream 3919 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020837 mRNA upstream 24467 34838761 ~ 34841323 (-) True AMCG00020837
AMCG00020845 mRNA upstream 75953 34890247 ~ 34891705 (-) True AMCG00020845
AMCG00020849 mRNA upstream 195597 35009891 ~ 35023812 (-) True AMCG00020849
AMCG00020854 mRNA upstream 271523 35085817 ~ 35099957 (-) True AMCG00020854
TU82397 other downstream 568907 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1439499 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1917111 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 2151585 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 2197909 32607862 ~ 32610695 (-) True AMCG00020774
TU82585 other upstream 48325 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 335274 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 348520 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 865138 35679432 ~ 35684555 (-) True G66279
TU82986 other upstream 999675 35813969 ~ 35819830 (-) True AMCG00020887

Expression Profile