RNA id: AMCG00020833


Basic Information

Item Value
RNA id AMCG00020833
length 1137
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00020833
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34751379 ~ 34755314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTATGACGATATCGGCGATGCCGGCCTGTCCGCCGTGGCGCTGTTCCAGTGCTCGCGGTGCCGGGGCTCCGTGCAGCCCCCGATCAAGCAGTGCCGCGGCGGGCATCTGATGTGCAAGAGCTGCCGGTCGTACCAGAAATTCTGTCCGAGCTGTTCCGGCTGTCACAGGATCAATGTCAGAAACTTAGCCATGGACAAAGTGGCCTTGATTCTTCGCTTTACCTACGACAGGTACTGTGGCGTTTCAGCCGCCGATGCCCTGTCGGCCAAAGCGGAAGACGTGATTGAGCTGTTCCAGTGTCCGGTGTGTTTCGACTTCGTGCTGCCGCAGATCCGGCAATGCAAGTCCGGGCACCTGATCTGCGGACGGTGTCGGCCGAAGCTGCGGCGCTGCCCGGTGTGCCTGCGCTCTCTGAGGGCCGGGGTCAGGAACGTGGCCATGGAGACGGTGGCTGAGACCCTTCCCGTCCCCTGCGAGAACCTGCCCACACAACCAGGACCTGCAGGCCAggccagagcagagcagagggGCATCTCCCATCAGGTATTGCTGGGGCAAGGGATGGAAGGGACTGGGGCCAGGGGGGCAGCGACCTCCATGTGGAATCACGTCTGTAACTTTTgctgctgtctgtgctgtgtgataTCCATGACGAGGGAGCTGGATTCGTACTACCAGACTGTACAGGATGAACTGGAGCCCACTTGGGTGTCAAATTCAGCTACGCTGTTGGAATTGCTCTTCACCATTCCCTTGACGCGCTGATGTTATACCAGATATAAATCATGTGGGGCTGACTGGGACTCTGCACTGTAACCATATGTAAGTGAATGTGAAGGCTGTGTAGATATTTTAGAAACCAAACCTCTCCAATTTGTTCCAAACTGAGTCAAAGCTAAATCAAAGCTGTTTTAGTAGGTTCACAcgtatttaaacaaattaactgaaacatatatgcagaaagaaagaaactttTAAGAAGACAAAACGTTTGAGAGAATTTTAAAGAGCTGAATAACTGTCCTgttctgtattgtgtgtttaaGTATAGCTTTTAGGAAATTGATCTTTTATTTATATCGAGGGCTTTCCAATATCTAATCTTAGAGAAGAATGATGctgtgttaatat

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82526 lncRNA downstream 1229 34749444 ~ 34750150 (-) True G66004
TU82525 lncRNA downstream 2050 34749127 ~ 34749329 (-) True G66003
TU82523 lncRNA downstream 4018 34746941 ~ 34747361 (-) True G66001
TU82465 lncRNA downstream 235481 34514368 ~ 34515898 (-) True G65957
TU82420 lncRNA downstream 331189 34416657 ~ 34420190 (-) True G65915
TU82573 lncRNA upstream 83447 34838761 ~ 34841242 (-) False AMCG00020837
TU82629 lncRNA upstream 143470 34898784 ~ 34942966 (-) True G66087
TU82668 lncRNA upstream 248264 35003578 ~ 35077562 (-) True G66123
TU82675 lncRNA upstream 324364 35079678 ~ 35081867 (-) True G66126
TU82676 lncRNA upstream 324364 35079678 ~ 35081867 (-) False G66126
AMCG00020834 mRNA downstream 9708 34729127 ~ 34741671 (-) True AMCG00020834
AMCG00020832 mRNA downstream 23015 34719704 ~ 34728364 (-) True AMCG00020832
AMCG00020828 mRNA downstream 177877 34569612 ~ 34573502 (-) True AMCG00020828
AMCG00020829 mRNA downstream 198053 34529783 ~ 34553326 (-) True AMCG00020829
AMCG00020830 mRNA downstream 229058 34519200 ~ 34522321 (-) True AMCG00020830
AMCG00020831 mRNA upstream 7879 34763193 ~ 34770642 (-) True AMCG00020831
AMCG00020839 mRNA upstream 31957 34787271 ~ 34791056 (-) True AMCG00020839
AMCG00020836 mRNA upstream 53290 34808604 ~ 34814294 (-) True AMCG00020836
AMCG00020838 mRNA upstream 62899 34818213 ~ 34826629 (-) True AMCG00020838
AMCG00020837 mRNA upstream 83447 34838761 ~ 34841323 (-) True AMCG00020837
TU82397 other downstream 511682 34222315 ~ 34239697 (-) False AMCG00020810
TU82216 other downstream 1382274 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1859886 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 2094360 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 2140684 32607862 ~ 32610695 (-) True AMCG00020774
TU82568 other upstream 53460 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 107305 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 394254 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 407500 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 924118 35679432 ~ 35684555 (-) True G66279

Expression Profile