RNA id: TU81870


Basic Information

Item Value
RNA id TU81870
length 1200
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G65465
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32186482 ~ 32187711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGTGTTCCCAAGAGACAGACTGGAACTGCAAACATGATCTGAAGCtacacacgcatgcacgcacacacacacacacgcacacacgcacatacacacacgtacacacactcactcagtaTCAGAACGGTTTAAAGAGCCAGTGATTCGTAACACAGTCATCACTCCATCACCCCGGAGAGGCTGCTGTGTCGAGGACAGGGGGGGTGTCCGGGCTGTCTGTCCTCTGGGAACTCCAGACACGGTCCCGCCGTGGACGTTTTAAGGAATTTGGGATTTCTTTGTGCGTTTCTAAGATGACAGCCTTCTCGGGACACTCCCTGTGGCTCCAGGGGCCCCGTGCAGCCACGGCCCCCGCGCTCCAGTATTGCGACTCGTGACGGGGAGTGAACCCTGGACAGCGACGACTTCGCCTCTTCTCGTTTGttactgtttcttttttatttgaaattgtatttttattttttgggctgtcgtttattttgtttctgaatttgATCAGATTGGGCAGCTTCCTTTTATGACACGAGCTGACTCTTTTCCACTAGAAAACTTATTgtagagaaaatgttttttctataatataaaaaaaaagtgaaaaaaaaaatcctacataTTAATATTGGTACTGTCATTTTTTTCAACTTCTgtttgagaaacaaacaaaaaaaaaaggtattttttagCTGGATTCTTGGGTAATCttattaagaaattgaaaacgaaaaaaaaaattcaactcACTTCTAGTGACTTAAGATGCCTTTAACCTCCATTCCATCTCCTGTGTAGAGTTTTCTATCTTTGTTGTAGTATATTAAAGCTATTTTAAGACGAAAGAGACAGATATCTACAGTTCCCTAGCGTTTTGCGTTCTCTTGGTTGGGTTTTTATTTTCGGTGTATAGGGCGCCCGTGCGTCTCggcagcagcggcagcagcagcagcatgtaTAAACCAGCTCGGTATATTCTCGTCTGTTTATATCGCTTCCTCTTTTTGTATCCTTTGTAATTGTACATGGTGAGTTGTAagctaagagagagagagagagcgcaagagagagggagagggagggggggcggGGAGGCAGGCCACTCGTGGACCCCCCCGCGACACTCCCCCCTCCCTGCTTCTCAATCCCTGTATGTATTttcacttatttgttttttctttcttagcaaGTACTTTCAAAGAACtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81868 lncRNA downstream 63649 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 125185 32058318 ~ 32061297 (-) True G65397
TU81708 lncRNA downstream 382690 31785515 ~ 31803792 (-) True G65337
TU81682 lncRNA downstream 427982 31757451 ~ 31758500 (-) True G65315
TU81681 lncRNA downstream 429793 31756262 ~ 31756689 (-) True G65314
TU81873 lncRNA upstream 25016 32212727 ~ 32215757 (-) True G65468
TU81961 lncRNA upstream 170527 32358238 ~ 32365142 (-) False G65549
TU81987 lncRNA upstream 327692 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 367149 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 369854 32557565 ~ 32558864 (-) False AMCG00020767
AMCG00020743 mRNA downstream 47575 32123391 ~ 32138907 (-) True AMCG00020743
AMCG00020746 mRNA downstream 63549 32122703 ~ 32122933 (-) False AMCG00020746
AMCG00020744 mRNA downstream 77066 32104730 ~ 32109416 (-) True AMCG00020744
AMCG00020745 mRNA downstream 103415 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020739 mRNA downstream 148327 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020751 mRNA upstream 839 32188550 ~ 32212493 (-) True AMCG00020751
AMCG00020752 mRNA upstream 46443 32234154 ~ 32244478 (-) True AMCG00020752
AMCG00020753 mRNA upstream 79435 32267146 ~ 32269733 (-) True AMCG00020753
AMCG00020757 mRNA upstream 102185 32289896 ~ 32291454 (-) True AMCG00020757
AMCG00020758 mRNA upstream 180407 32368118 ~ 32369718 (-) True AMCG00020758
TU81423 other downstream 1377636 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1655346 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2653365 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2780846 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3389526 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 173524 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 420151 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 467423 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 698653 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1180914 33368625 ~ 33369105 (-) True G65756

Expression Profile