RNA id: AMCG00021864


Basic Information

Item Value
RNA id AMCG00021864
length 813
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00021864
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34242865 ~ 34249647 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAGTTTGCCTGTAAATGGGCGATGGCACTGGAATGATAAAAATCAAACGCTTGAATTTGTCAGtttcaattcaacaatagaaacaaaagacaaaaggaagaaaataaaatctatacattttcagGAGCATGTTAATAAGTGTGCAGAAAGGAGTCAGCAACTAAATGACTTTCTCTCAGCCCTACTGCTATACCTATCCTGTTACTTTGAAAAACAAGCTTTGGAAAAAAAGCCCAAGCCCTTAATGGCGGAGCCAAGCATTACAGAAAGAAGAAACATGGCAGAGGCATGTGCAAAGGTTGAACTAGCAAGAAAGAAGCTTGCTTTCATGTACTCAGTCCTGGTCCTTGGGCTTGGACTGTCTCAGCAGCACCATATGGACTGTGGAAGCTTCTCTGCATATGCAGCCTGGGTGACATTCAAACGCAGTGATCTTCAAGGGATCCAAGAGGAGGTGGGCAGGCTCCTTCGTTCTGACACCTTCAATCCTGCAAGCAGGGTAAAGGAGCATGACGAAGAGCAGGCAGGAAAGGATACCTATTTAATAGAAGGAACAGCTTCTGCCCTTGTTAAAAGtgtCGGGATCATTGGGCAGCCTTTGAGCCAGTTCAGCCGCCACACTCTGGTGCCTCTGGGTTCTGAACAGGAAGATGAAGAAGAGGATGGGTGTGATCAGCACATCAGAAGCAGCGTAGCTTCCTTCAGATCTAGGGGCCCTTTATCATCAGAAGCAGGGAGACATGGTGGATCTAGCCAGGTTAGCGCTGTTATCTCTAGGGCAACAACAGTGGGAATCTACTCAGACACTTAA

Function

GO: NA

KEGG:

id description
K17575 PPP1R36; protein phosphatase 1 regulatory subunit 36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110961 lncRNA downstream 65384 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 262037 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 397413 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 481391 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 482245 33760272 ~ 33760620 (-) True G88871
TU111017 lncRNA upstream 10357 34260004 ~ 34353710 (-) False AMCG00021867
TU111025 lncRNA upstream 34737 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 94988 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 137607 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 170113 34419760 ~ 34420279 (-) True G89011
AMCG00021860 mRNA downstream 53339 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 227975 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2145346 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 2173750 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 2195281 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021865 mRNA upstream 2027 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 14168 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021866 mRNA upstream 77511 34327158 ~ 34348033 (-) True AMCG00021866
AMCG00021867 mRNA upstream 98395 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021868 mRNA upstream 129054 34378701 ~ 34387667 (-) True AMCG00021868
TU110795 other downstream 2173401 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3110680 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3354653 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3818253 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4500057 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 97341 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 97341 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1125369 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1694105 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2165392 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile