RNA id: AMCG00021861


Basic Information

Item Value
RNA id AMCG00021861
length 282
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00021861
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34006659 ~ 34014890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTGTGGACAGCAGAGGAGCAGGGAGGCATTGGAGCAAATCAATACTATCAGCTTCACAAGGTAAACATCTCAAACTTTGACCTGGTCATGGAGTCTGACCTGGGCACCTTTTCCCCACTTGGCATTCAGTTTACTGGCAACAATGAATCCAAGGCCATCATGAAGGAGGTTATGAAGCTGCTGAAGCCTATTAATGCAACAGGGCTGGTCAATCACGGGGAGGGCACTGATATTAACATGTGGATGCAGGCTGGTGTACCAGAGATCATTGTTtaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function

KEGG:

id description
K01302 CPQ; carboxypeptidase Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110940 lncRNA downstream 25831 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 161207 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 245185 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 246039 33760272 ~ 33760620 (-) True G88871
TU110885 lncRNA downstream 335740 33670467 ~ 33670919 (-) True G88866
TU110961 lncRNA upstream 162157 34177047 ~ 34177481 (-) True G88939
TU111017 lncRNA upstream 245114 34260004 ~ 34353710 (-) False AMCG00021867
TU111025 lncRNA upstream 269494 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 329745 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 372364 34387254 ~ 34388010 (-) False AMCG00021868
AMCG00021845 mRNA downstream 1909140 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 1937544 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 1959075 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 1969080 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 1988525 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021860 mRNA upstream 164702 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 227975 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 236784 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 248925 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021866 mRNA upstream 312268 34327158 ~ 34348033 (-) True AMCG00021866
TU110795 other downstream 1937195 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 2874474 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3118447 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3582047 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4263851 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 332098 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 332098 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1360126 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1928862 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2400149 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile