RNA id: AMCG00021848


Basic Information

Item Value
RNA id AMCG00021848
length 441
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00021848
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32011442 ~ 32018134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACTCCTCCAGTAGCGGGAGCAGGAATGCCTTCTGGAGCATTCCCAGGGCAACAGGCCCAGGCGGCACGTGAAGTAAACACGGCCTCTCTTTGTCGCATTGGACAAGAAACTGTGCAAGATATTGTCTTCAGGACCATGGAGATCTTCCAGCTGCTGAGAAACATGCAGCTGCCCAATGGCGTGACCTATCACACCAGCACACACCAGGACCGGCTGGGCAAACTACAGGAGCACCTGCGGCAGCTTTCTGTGCTCTTCAGAAAGCTCCGGCTGGTCTACGACAAATGCAACGAGAACTGTGCTGGGCTGGACCCTGTCCCTACCGAGCAACTGATACCGTATATAGAGGAGGATGGGTCAAAGCACGATGACCGCTCAGCAAACCAGATTCGATATGCCACCGAAGAGAGGAGGGAAGTGCTGGAGGTGAAcaag

Function

GO: NA

KEGG:

id description
K15143 MED30; mediator of RNA polymerase II transcription subunit 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110768 lncRNA downstream 22392 31988774 ~ 31989050 (-) True G88762
TU110747 lncRNA downstream 151609 31859409 ~ 31859833 (-) True G88742
TU110741 lncRNA downstream 175203 31798752 ~ 31836239 (-) True G88736
TU110628 lncRNA downstream 1049346 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 1448642 30525746 ~ 30562800 (-) True G88562
TU110805 lncRNA upstream 76568 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 674137 32692271 ~ 32692496 (-) True G88831
TU110885 lncRNA upstream 1652333 33670467 ~ 33670919 (-) True G88866
TU110890 lncRNA upstream 1742138 33760272 ~ 33760620 (-) True G88871
TU110892 lncRNA upstream 1743108 33761242 ~ 33761474 (-) True G88873
AMCG00021828 mRNA downstream 661074 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021826 mRNA downstream 786061 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021830 mRNA downstream 879262 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021831 mRNA downstream 902796 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021829 mRNA downstream 918072 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021847 mRNA upstream 13554 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021846 mRNA upstream 28976 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021849 mRNA upstream 49131 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021845 mRNA upstream 77391 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021861 mRNA upstream 1988525 34006659 ~ 34014890 (-) True AMCG00021861
TU110664 other downstream 879257 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 1123230 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 1586830 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 2268634 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2939682 29069201 ~ 29071760 (-) True G88288
TU110795 other upstream 45251 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 2328854 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 2328854 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 3356882 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 3925618 35943752 ~ 35946984 (-) True G89368

Expression Profile