RNA id: AMCG00021888


Basic Information

Item Value
RNA id AMCG00021888
length 543
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00021888
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35727419 ~ 35740510 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTAGATAATCGGTGTGACATTTGTTTCCCACTTTGTTACACATTTAGTAGCAGTGTCTATAGATCCTGCAGATTCAAGCGTCCGTGCCAGGAAGAACTACAGCAATCCCATGCCAGTCCTAGACAAGAGAACGCATCCCCACGCCCAAAAGTGAAACACTGCAGCAGCTGCAATAAGTGCATCTATGATTTTGATCACCACTGCAACTGGCTGAACAACTGTGTAGGAGGAAGGAACTACTGgtttttcttgGTTACTGTGGTGTCTGCAGTCCTTGGAATTCTGCTGTTTGTATTTGTCATCCTCTTTATATTCATCGAGCATTTTGTGAACCCTGCTACATTACGTTCAGCTCCACAGTTTAATGTGGCTAAAAAGATGAGTACTTATGAATACATACTGaaacagctacacacacagagCATCAGAGACCAAGATAAGGAAACTACTCAATCAACACCTACCAGTGGTACATCCTTGCAGAATTTGCCAGCAGTGGAACCTATCATTGACTGTGATGCACCATTATCTGGAAGGGCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111367 lncRNA downstream 15703 35711463 ~ 35711716 (-) True G89264
TU111347 lncRNA downstream 272221 35454567 ~ 35455198 (-) True G89247
TU111340 lncRNA downstream 322079 35405057 ~ 35405340 (-) True G89240
TU111310 lncRNA downstream 356939 35370106 ~ 35370480 (-) True G89212
TU111206 lncRNA downstream 646246 35079573 ~ 35081173 (-) True G89130
TU111375 lncRNA upstream 76856 35817366 ~ 35817621 (-) True G89272
TU111491 lncRNA upstream 111526 35852036 ~ 35893714 (-) True G89359
TU111511 lncRNA upstream 226609 35967119 ~ 35985261 (-) True G89373
TU111572 lncRNA upstream 757684 36498194 ~ 36501828 (-) True G89428
TU111576 lncRNA upstream 771089 36511599 ~ 36511931 (-) True G89431
AMCG00021889 mRNA downstream 54896 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021885 mRNA downstream 375786 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021877 mRNA downstream 907040 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021879 mRNA downstream 917817 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021878 mRNA downstream 942707 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021890 mRNA upstream 57680 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021887 mRNA upstream 188081 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021891 mRNA upstream 286770 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021892 mRNA upstream 314464 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021895 mRNA upstream 674369 36414879 ~ 36417745 (-) True AMCG00021895
TU111315 other downstream 331648 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 1347124 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 1376294 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3657955 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 4595234 31129583 ~ 31132185 (-) False AMCG00021830
TU111504 other upstream 203242 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 674529 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 938017 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 2520877 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 2655061 38395571 ~ 38397755 (-) True G89611

Expression Profile