RNA id: TU111491


Basic Information

Item Value
RNA id TU111491
length 1318
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G89359
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35852036 ~ 35893714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAGAAATTGCAGCTCTAAGGCTGGATTTATTTGGATTAACAGAGGGGCTTTGCAATAAAGATcaatcacaaagacaaatcaaaagtaaaataaacccTAGCTCTTTTTGAGCcctgtagcataaggtacacttataaattttaattaaagaagtgaatttatagtgtcaccttatcacgaatcctggaatcttgtagaactcaatttccgtaataattggacgcagacaccaattccaaagatataaattgtcaaatgtattaaaaacaaagactaaatatTGCACTAcaccaattatacaaaaagggaaaaactaattaaaattcactctagatcaacaaatcaaagacaaatcacttccatgaccaaatcaaagaccatgggatcgcatatgataacacacaaatcgttaaacaaaaaaggttataaactcattgactacaatacaataattagtAAGaagaaggtgagtctctcattagtattgttagtcggacatcaaataactacgcaggttagtatttatgtcaggtaacttctcgttatatatatatatatatttatttatttagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaaatgattattattcaatgattaaggataggcggggccaccaataatctaatgtctattaatCTGTGtaaatttcagactaaacagttaaacaggaatgagaagatatttctcggcgttgacagattttatttctaaaattttcaaacaaaacagtttaatgcagcactcatttatatttaagaaaactaaatgaaattacacattataaagtttatgactcacagaataacatttctaattgatttctcaaatgtcacgaatcataaactccaaactgttaaacttactTCGTCGCatagaggcctctctgtcttcgggctcaaataaaaacacacgGTccatgtggtttggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaagttggggtttcgcgaaacagagtcttttccaaacagattttccactggtttgaaggctccaagggtgtgcacaaaatcttctttgtaagcagggtcTCTCACCGTACttatttgaagacaaagtctttgaggaaagcagggccctgtttggttccaagggtcgagtttcttaagactcaatagctatttaaatgactgacactttcgtattcagtcaacttagtcaattgtccagctgtaaaactccactgatcagatgagTACAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111375 lncRNA downstream 34415 35817366 ~ 35817621 (-) True G89272
TU111367 lncRNA downstream 140320 35711463 ~ 35711716 (-) True G89264
TU111347 lncRNA downstream 396838 35454567 ~ 35455198 (-) True G89247
TU111340 lncRNA downstream 446696 35405057 ~ 35405340 (-) True G89240
TU111310 lncRNA downstream 481556 35370106 ~ 35370480 (-) True G89212
TU111511 lncRNA upstream 73405 35967119 ~ 35985261 (-) True G89373
TU111572 lncRNA upstream 604480 36498194 ~ 36501828 (-) True G89428
TU111576 lncRNA upstream 617885 36511599 ~ 36511931 (-) True G89431
TU111584 lncRNA upstream 630795 36524509 ~ 36537711 (-) True AMCG00021896
TU111707 lncRNA upstream 1364829 37258543 ~ 37258818 (-) True G89539
AMCG00021890 mRNA downstream 52929 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021888 mRNA downstream 111526 35727419 ~ 35740510 (-) True AMCG00021888
AMCG00021889 mRNA downstream 179513 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021885 mRNA downstream 500403 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021877 mRNA downstream 1031657 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021887 mRNA upstream 34877 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021891 mRNA upstream 133566 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021892 mRNA upstream 161260 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021895 mRNA upstream 521165 36414879 ~ 36417745 (-) True AMCG00021895
AMCG00021896 mRNA upstream 631172 36524886 ~ 36537718 (-) False AMCG00021896
TU111315 other downstream 456265 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 1471741 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 1500911 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3782572 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 4719851 31129583 ~ 31132185 (-) False AMCG00021830
TU111504 other upstream 50038 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 521325 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 784813 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 2367673 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 2501857 38395571 ~ 38397755 (-) True G89611

Expression Profile