RNA id: TU105608



Basic Information


Item Value
RNA id TU105608
length 290
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G84651
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10842732 ~ 10843021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaaggctaactctgcctcctctccactctccttcctccagagccgctccttctcatccctggcccctaaatggtggaacgacctgcccactgaagtcaaaacagcagagtccttgacctcattccagcgcttactcaagacgcatctcttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105563 lncRNA downstream 365273 10474417 ~ 10477459 (-) True G84614
TU105548 lncRNA downstream 428251 10413175 ~ 10414481 (-) True G84603
TU105443 lncRNA downstream 752257 10087704 ~ 10090475 (-) True G84514
TU105216 lncRNA downstream 2002073 8836275 ~ 8840659 (-) False G84332
TU105624 lncRNA upstream 307965 11150986 ~ 11151438 (-) True G84667
TU105639 lncRNA upstream 601810 11444831 ~ 11445148 (-) True G84682
TU105649 lncRNA upstream 860758 11703779 ~ 11704012 (-) True G84692
TU105737 lncRNA upstream 1250506 12093527 ~ 12100704 (-) False AMCG00021249
TU105739 lncRNA upstream 1258125 12101146 ~ 12101365 (-) True G84760
AMCG00021242 mRNA downstream 113119 10720148 ~ 10729613 (-) True AMCG00021242
AMCG00021241 mRNA downstream 191059 10635345 ~ 10651673 (-) True AMCG00021241
AMCG00021236 mRNA downstream 291130 10527150 ~ 10551602 (-) True AMCG00021236
AMCG00021238 mRNA downstream 380268 10457597 ~ 10462464 (-) True AMCG00021238
AMCG00021237 mRNA downstream 403902 10423559 ~ 10438830 (-) True AMCG00021237
AMCG00021243 mRNA upstream 140935 10983956 ~ 10986502 (-) True AMCG00021243
AMCG00021246 mRNA upstream 964272 11807293 ~ 11843418 (-) True AMCG00021246
AMCG00021250 mRNA upstream 1004302 11847323 ~ 11871511 (-) True AMCG00021250
AMCG00021251 mRNA upstream 1041976 11884997 ~ 11931797 (-) True AMCG00021251
AMCG00021249 mRNA upstream 1250456 12093477 ~ 12100854 (-) True AMCG00021249
TU104623 other downstream 4296155 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 6091497 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 8160970 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 8383353 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 8864764 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 1684072 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 1876843 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 2784314 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 3026918 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 3206953 14049974 ~ 14051897 (-) True G85115

Expression Profile