RNA id: TU111960


Basic Information

Item Value
RNA id TU111960
length 456
RNA type TUCP
GC content 0.40
exon number 1
gene id G89765
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39485833 ~ 39486288 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattattttcctcaaaattctacaaacaataccccataatgaaagaaagaaaagtttgaaatctttgcaaatttattaaaaataaaaaacaaaaaaagcacatgtacaaagtattcacagcctttgctcaatactttgttgaagcacctttggcattaattacagcctcaagtctttttgagtatgatgctacaagcttggcacacctattttgggcagtttcttccattcttctttgcaggacctctcaagctccatcaggttggatggggagcgtcggtgcacagccattttcagatttctccagagatgttcaatcgagATGTTCAATCGATGTTcaaagtctgggctctggctgggccactcaaggacattcacagagtcaGAGAGTCAGAGTTCAAAGTTGTCCTGTAACCACTGCTTTGtcatcttggctgtgtgcttagggtcgttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111946 lncRNA downstream 15729 39468765 ~ 39470104 (-) True G89751
TU111944 lncRNA downstream 20200 39464432 ~ 39465633 (-) True G89749
TU111943 lncRNA downstream 22912 39462475 ~ 39462921 (-) True G89748
TU111909 lncRNA downstream 99751 39385818 ~ 39386082 (-) True G89724
TU111908 lncRNA downstream 100157 39383649 ~ 39385676 (-) True G89723
TU111971 lncRNA upstream 609 39486897 ~ 39489033 (-) False AMCG00021924
TU111975 lncRNA upstream 59653 39545941 ~ 39546146 (-) True G89776
AMCG00021925 mRNA downstream 6817 39475976 ~ 39479016 (-) True AMCG00021925
AMCG00021923 mRNA downstream 37105 39444488 ~ 39448728 (-) True AMCG00021923
AMCG00021926 mRNA downstream 62457 39420257 ~ 39423376 (-) True AMCG00021926
AMCG00021922 mRNA downstream 112376 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021916 mRNA downstream 200031 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021924 mRNA upstream 2193 39488481 ~ 39548802 (-) True AMCG00021924
AMCG00021928 mRNA upstream 69219 39555507 ~ 39556745 (-) True AMCG00021928
TU111863 other downstream 226029 39255879 ~ 39259804 (-) False AMCG00021918
TU111784 other downstream 1088078 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 1201978 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2798191 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 3047483 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile