RNA id: XM_043242305.1


Basic Information

Item Value
RNA id XM_043242305.1
length 2408
RNA type mRNA
GC content 0.44
exon number 5
gene id socs1b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6220604 ~ 6226114 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAATTGTTTACTGTTACACAAGTCACAGTAAAGGAAGTTAAATGAAACTGGTTTATATACCAATACATTGCCTCATTGCCTCTATAACTTCCCCTGACTGACCTCGGACTGGCGCTTTAAGTAGTTTGCCTAACACCTCAAAGTCCCGCCTTCGGGCCTGCAGCCATTGGCTCAACGTCTCAGTTGGGGAATTTTAATTGGATGCTGAGCTGACGTTTAAAAAAATCCGGAACTAATACTGCGTCTGTAAACAAACGCTGCATGTCCTTTGGAGAAACGACATGCCGACCTCCCCCGTAAAGACGCGGATTCCACTTACGAGTTTGGGTCATCTTATTAGCGAAGTCAAGCGACAGCTCTTCGGGATTGATCCACCAATGCCAACAGAACTGACAGGATGGAGGAAGCACtttaacagctacacattacaaGGACGCAGAAATTTTGTTCTTGCCACATATGGTGTTCTTGCACTCACAGCTGCCGTCTACATGATGAGACACAGCAGGAAGGAAGAACATGAAACAACATCTGCCTCCTCCATAAACTACAAATGGAAAGTTAAGGGAGGTTAAGAATACAAGAAATTATTCATGATCACTACACGAGTGGACCTTGGTTAATGAAGCTCACTGGCCAGATGTTTTCCTCTTCTATCATGCACACAGGTTgtcatttaacataaaaataaataaaatcacaataaactGTAGACCAATGAAGTCCCGCTTACGTCACCAAGAGAAAAGTCTGTTGCTTGTGAATAATACATCCGTGCCTGGATGTATGGTTCTCAATAAAACCCATAACATTGCATGTGAATCTAGATAAAGTGAATgtcaataatgttttaatagccTTGCTGTACTGTTTCGTTTATTAGGTGTTGATCTGCCAGTAGAGTGCAGTGCAAGCTTATCGTCATGTGTGTTTCTTGGAAGCCGTTTGCTTTATGTGTTTTAAAGGCAAATCGTGTGGTTACTTCAACAGCTGTTGGTTTTAGGTTAGTGAAACTAGCATGCCAGAAAGGGATGTTTTCCTGTAAAGTGAAATGCTCAGAAACTATTTCAGAAATAACAGCGCtcttgtaatgtgtttttttcccccctgctTTTTGTTTCAGGATGAACATGTCATTTAATTGTGATCAGGTGTCATTTTGAAAGTCAGTCTTCCTTTAAGTGTAGTTGCTGTGAGGTCTACAATATTCCATTATTATGCTAATAAACACATGAATGAGGTACTACCCATTTTCTGtagtaaaatatgtttctgCCGTATGTTTTACCAAACAGTTATGTCATCTACGTATCTCTGACTTTTCAAATACTTTCGCCTCGGTGTGATGCATCTACACCTGAATCAACTGAAgtgaaactgaaatgaaaaatctgtgtGCACCTTTGGTGGGATGTGGTAAACCTTTTTCTTTCCCCCCCTTAAAGACAGAGCGGTATCCTACTCAGCTGTAGTAAATATTCTTTAGGTGAATGTGCAAGCAGTTGCATTAGAGCTGTggtctttttggtttttgtggCTCATCTCGTCATCCTAAAGGTCCATTCAGTCCTTTGggtgaaaattcatctttggaTTCATCTGCAGTGCAAGGCGCCGCAGAATCGTTCATCTATGTCGTAGGACCATGGAGGAATGGTATGAGTGTGCCCTGATTCAGAATGGTCCAGCATAATGACACTGACCATGCAGTCGCGCCACAGAGCCCATCCAAGCTGGCCGAGTCCCCTAAACCCTGTGCTGTCCTACCAACACACTTCCACCCCTTTCGGGACCAGCGGGAATGTGACCTCATCACCCAGGCGGTGGATTACTTGAAGCACAGTGGATTTTACTGGGGCCCCTTGGAAGTAGACGAAGCTCACTTTCGACTTGCCAGACTTCCTCTTGGGACATTTCTGATCCGGGACAGCATGCAGGCAAACGTTTTCTTCACTCTCAGCTATCGGGCCCCCGAGGGCCCGACCAGCGTGAGGGTGCTCCTGAAGGACGGAGGATTCAGTTTAGCGGGAAGCAAAAATACATTCTCTTGCCTTTTTGGCTTGCTAGAATACTATATTGCGTCCCCCAAAAAGAGCCTGAGCATGCCGTATCGCGGAGAAGCGCCGCAGAGCCTGCAAGAACTGTCGAGGAGAGCCGTGGTGCGGAGTTTGGGGAAAGATAGTATTCAACATCTCCCCGTGAGCAAGAAACTGAAAGAATTTCTGTGGTTGTACCCTTTTAGTATATGAACGTGCGTCGTTCGCGTGTAGATGTTACAGACGTTGCAGCTCTTCGACAAAGTACGATTTATTGGAACAGCTATCCCAAAGTGCATTTCATTTGGCGGGGTCACATTAGAGGAAATTCTGCAAAATTTCACGGGGCGAGAAAAATAGCGTGTGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867 lncRNA downstream 2015 6218244 ~ 6218589 (-) True G1288
TU1861 lncRNA downstream 6057 6213641 ~ 6214547 (-) True G1282
TU1847 lncRNA downstream 107081 6111463 ~ 6113523 (-) False G1270
TU1836 lncRNA downstream 131201 6089023 ~ 6089403 (-) True G1263
TU1825 lncRNA downstream 152990 6066311 ~ 6067614 (-) True G1257
TU2016 lncRNA upstream 100909 6327023 ~ 6328061 (-) False gng13a
TU2031 lncRNA upstream 163306 6389420 ~ 6389637 (-) True G1394
TU2035 lncRNA upstream 187268 6413382 ~ 6413581 (-) True G1398
XR_006251203.1 lncRNA upstream 261530 6487644 ~ 6490193 (-) True LOC122347249
TU2204 lncRNA upstream 556299 6782413 ~ 6839409 (-) False G1499
XM_043241594.1 mRNA downstream 15458 6138623 ~ 6205146 (-) True grin2ab
XM_043241882.1 mRNA downstream 113624 6099976 ~ 6106980 (-) True abcg2b
XM_043242049.1 mRNA downstream 132842 6084199 ~ 6087762 (-) True actb1
XM_043241809.1 mRNA downstream 137426 6078416 ~ 6083178 (-) True fbxl18
XM_043242088.1 mRNA downstream 142331 6074411 ~ 6078273 (-) True LOC122347076
XM_043241649.1 mRNA upstream 41549 6267663 ~ 6274750 (-) True si:ch211-14k19.8
XM_043242379.1 mRNA upstream 50943 6277057 ~ 6280616 (-) True ndufab1a
XM_043241605.1 mRNA upstream 55059 6281173 ~ 6288577 (-) True palb2
XM_043241694.1 mRNA upstream 73802 6299916 ~ 6312773 (-) True ern2
XM_043242402.1 mRNA upstream 100960 6327074 ~ 6328341 (-) True gng13a
TU1845 other downstream 107081 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 367360 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 442947 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1921411 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 2206317 4007840 ~ 4014287 (-) True G782
XR_006251170.1 other upstream 41549 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 231937 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 313414 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 845475 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 936209 7162323 ~ 7169421 (-) False G1642

Expression Profile