RNA id: XM_043236352.1


Basic Information

Item Value
RNA id XM_043236352.1
length 4221
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC122342514
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6533501 ~ 6544558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAACGAAACTTGCATTGTCTCGGAAATGAAACTTACCGGCGTAGTGGAGTAACGTTAACCACAGCCAGATTTGCCtcgaaaaaaaacatcactctGTGACGAACTCAAAACGAGTCCACTTCGCCGTTTTGGTTTGTTATCGTGATACTTAGAAActattttggcattttaaagcCGTTTAAGGATGGAGAAGATGAGTTACACGTTCAGTCAGCAATATGAGGAAAAAATCCGTCCTTGCATCGACACCATCGACAATCTACGGTCTCTGGGAGTCGAAAAGGACCTGGCGCTGCCTGCCATCGCCGTCATTGGAGACCAAAGCTCGGGGAAGAGTTCAGTTCTCGAGGCGCTGTCTGGAGTGGCGTTACCCAGGGGTAGTGGAATTGTTACAAGATGTCCTCTTGAGCTCAAGATGATAAGAAGTAAAGATGAAGACAAATGGCATGGGAGAATCAGCTACCAGGACATACAGGAAGATATTCATGATCCAGCAGAAGTGGAGAAAAAGATCCGTGAAGCTCAGGATGAGATGGCTGGAGTAGGTGTTGGTATTAGTGATGAACTCATCAGTCTGCAGATCACCTCTGCCAATGTCCCTGACCTCACTCTCATTGACCTCCCTGGTATCGCACGAGTGGCTGTCAAGGGGCAACCGGAGAATATTGGGGATCAGattaAGAGACTGATCAGGAAGTTCGTTACAAAGCAAGAAACGATTAACCTGGTCGTGGTGCCATGCAATGTTGACATCGCAACCACAGAAGCGTTAAAGATGGCTCAGGAGGAGGACACTGAAGGCGAAAGAACATTAGGCATCTTAACAAAGCCGGATCTGGTGGACAAGGGCACCGAAGAGACAGTTGTAGACATTGTGCACAATGAGGTCATTCACCTTACTAAAGGTTACATGATTGTGAGGTGCAGAGGACAAAAAGAGATTTTAGATCAAGTCACTCTCAATGAGGCCACAGAAACAGAGAAAGCCTTCTTCAAAGATCATCCTCATTTCAGcAAACTTCATGAAGAAGGTTTCGCTACTATTCCCAAGTTGGCTGAGAAATTAACAATTGAGCTGGTTCATCAcattcaggtaaaaaaaaaaatatatataGCAGATATTCCGAACCGTTTTGAGATGAAGCTACACAGGAATAACATCTTGGAGGAGTCTTACAGACGAATCATGTCCCTGAAGAGACCCGACAGTCTAAAGGCTCGTCTCTGGATTGAGTTTGAATCGGAGAAAGGCCTGGACTACGGGGGAGTGGCCAGAGAATGGTTCTTCCTGCTCTCCAAGGAGATGTTTAACCCTTATTATGGGTTGTTTGAGTACTCAGCCACaGATAACTACACGCTTCAGATCAATCCAAACTCCGGCCTCTGTAATGAGGATCACCTCTCATACTTCAAGTTCATCGGTCGAGTGGCCGGCATGGCTGTGTATCACGGAAAGCTGTTAGACGGTTTCTTCATTCGACCGTTCTATAAAATGATGCTGGGCAAGCAGATCACGCTGAATGATATGGAGTCAGTGGACAGTGAATACTACAACTCTCTAAAGTGGATTCTGGAAAACGACCCCACTGAACTGGACTTGCGGTTCTGCATTGATGAGGACAACTTCGGACAGaCGTATCAGGTTGATTTGAAGCCAAGTGGATCAGACATGGTTGTAACCAATGACAACAAGAAAGAATATATAGATCTGGTGATGCAGTGGAGGTTTGTAGACCGGATCCAGAGACAGATGACGGCCTTCAAAGAGGGTTTCTATGAGCTGATACCTCAGGACCTGATCAAGATCTTTGATGAAAATGAGCTGGAGCTGCTGATGTGTGGCTTAGGAGACGTGGACGTCAACGACTGGAGAGAAAAcaccaaatacaaaaacagctaCAACTCAAATCACCCTGTTATCATCTGGTTCTGGAAGACGGTGTTGCTGATGGATGCAGAAAAGCGAATCCGTTTGCTGCAGTTTGTGACGGGAACGTCCCGCGTCCCGATGAACGGCTTCGCTGAGCTCTACGGATCCAATGGGCCGCAGTTGTTCACCATCGAACAGTGGGGCACGAGGGACAAGCTGCCCAGAGCGCACACCTGAGCTCACACGTGTTTCAATCGTCTGGACCTCCCCCCGTACCCCTCGTTCTCCATGCTGTACGAGAAGATGCTGACGGCAGTGGAGGAGACCAGCACTTTCGGTTTGGAGTGAATGTCGATTTTTGCACTTGTGTACGCCGATCAAAAATACTTCATTTCCACGACCCGTCGAGGAACAGCGAAGGACGCAGCCACCTAAAACAGACACCAGAAGCACTTAGGCGTATGTTTTGTACACCGCGTCACTTAAAAATACTTCCTTGGAAAGCAACAGACAGAAAACGAACGGGCGAGCTGGACCGGGGGATGTCCGGCTCCGGGATGAATCGAGGAGGGCGTGGATTAAAACGAGGAACAACACAAACCCAAAGGACTTTGATATTCTCGCTCTctttttatctgtaaaaaaaagacttttctaCGGAGCGTCAAAATGCGGCGCGAACGAACAAATGCTGTGTTGTGAAAGCTTTTTCGAATCGCCTCAAACGCTATCACACACGACAGCGCCGCCCGCTATACCGAACCGAAATGTACGTGTCCTCTCTTCTTTTTATCGCATTTATACGTCGGTCATTCTCGTAGGTTCGTTTTGACGCCGCGTGCTTCTCGTCGTCAGGTTTGCGACACTTTTGAATGAATTCGGTTGCTTCTATGCTTTCACGTGTGACGTTTTCAAAGGGCATGTTAACACTGAAGTGCACTCGCAGACGCACTACAACATCACGAATGTGACCACTGTGCGCGAAGGATAAAAAGAcgatttttttttggactttaCAGTCCAACCCAGGCCTTTCTGTTGTCTTCGGATGACACCATTTCGTTCACGAAGACATTTGAAGTAAGAGAGCGGTCACATCCCCACAGAATAAAGCTACAAAAACACTCAAAGTCAGCATGAAACCCGAAACGGACgccatttgttttattgatattgtGGTATATAATAAATGCCACAGTATAACAGCTCGCAATGCCATTTCGTgttgactttattattatttccatatCCTTATCTAGCTTTAGTGTGACGTTAACACATCTCTGTTTCGTTTTTCGCTCCgacagcgtttttttttttttgtatgatacGAAACTGGAATATCGAGCCCATATCAATACATTCCAGACTTTTACGAAACACTGCCGTGGCTGGATCGTACTCTGAATGTTTTCTAATCTGAATTTGAGTTGATATCGCTTCCAGTGAAAACTGGTGCAGTCGAAACTGCCATGAGGCCCATCGAATTTTGGAATAGCGATGAAGACGGACGCGAGCATATCATCTTTTGTCAGTTCGATTGCGGCCGGCTAGATCGTTGATGCAAACCGGATAGatctttgttattttgtattaagGCTTTTGCAGTGGCGTGCTGATATTTGTGCTGAATGTACCAAAGGTTTAGGGCTGCCGTAGACCGTCCCGACCCTCTTTTGTCCAAgctttgtttgattaaaaaaaaagaaaaaagcaactAAAAAACAACGGCgttaataataaaagcttttttttggaTGCCCCGGTTTTCCtcttaatttaactttttagaGTAGctttttcacaatgttttacacaatataaaaatacctATACGATGGGGAAACTATTATGCTTTTTGTTGTCGTTTGAAGATGCATTGAAATTGCATTGCTGAATATTTATGTACGGTATATCCGGAGgtttaaaggagcagttcagctaaaaatgaaatttatgttatttattcgCCCTCTTTTTTGTGGAAGAGAAAAGTTATTTCACAGATATCCAGAGACTGGGAATGtataaaagcagcataaaagTCCAACGTTTCTTGGAAGAAAGCATATTATGTGAGTGAGGGTAAATGAATTtctgtttttgggtgaactgttcctttaaatgtccCCTGCCTTTCTAAAGACCAGAGGCTTCAGACTGAGATCACACATAAGTTCTGGCTTTCTGCTTTTGACTTTCTGTACTACTTCAATCTTGCACCGTTCACGTGCTCTGAAAACATGTGACTGTTGATTGGATAACGGTTTTCAGAGCTCCACATTTgggtttttctctttttttgtttcagcacAGATGATTGTATAAAGCTGTTTATCTCACGGAAAA

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251203.1 lncRNA downstream 43308 6487644 ~ 6490193 (-) True LOC122347249
TU2035 lncRNA downstream 119920 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 143864 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 205440 6327023 ~ 6328061 (-) False gng13a
TU1868 lncRNA downstream 307611 6224268 ~ 6225890 (-) False socs1b
TU2204 lncRNA upstream 237855 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 257736 6802294 ~ 6802755 (-) True G1519
TU2188 lncRNA upstream 291096 6835654 ~ 6839409 (-) True G1499
TU2190 lncRNA upstream 291096 6835654 ~ 6839409 (-) False G1499
TU2192 lncRNA upstream 291096 6835654 ~ 6839409 (-) False G1499
XM_043241672.1 mRNA downstream 65251 6456044 ~ 6468250 (-) True gaa2
XM_043241782.1 mRNA downstream 80859 6439035 ~ 6452642 (-) True micall2b
XM_043241771.1 mRNA downstream 81878 6439035 ~ 6451623 (-) False micall2b
XM_043241774.1 mRNA downstream 82291 6439035 ~ 6451210 (-) False micall2b
XM_043241711.1 mRNA downstream 183000 6339847 ~ 6350501 (-) False ubn1
XM_043242391.1 mRNA upstream 1403 6545961 ~ 6547468 (-) True LOC122347228
XM_043241908.1 mRNA upstream 35646 6580204 ~ 6593716 (-) False LOC122346971
XM_043241917.1 mRNA upstream 35646 6580204 ~ 6588774 (-) True LOC122346971
XM_043241941.1 mRNA upstream 44499 6589057 ~ 6593789 (-) True LOC122346986
XM_043241215.1 mRNA upstream 170187 6714745 ~ 6761771 (-) True LOC122346519
XR_006251174.1 other downstream 65247 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 258750 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 419978 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 680257 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 755844 5777571 ~ 5777657 (-) True LOC122353693
XR_006250919.1 other upstream 527031 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 617765 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 661026 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 674428 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 2058742 8603300 ~ 8607795 (-) True G1926

Expression Profile