RNA id: TU2204


Basic Information

Item Value
RNA id TU2204
length 427
lncRNA type read_through
GC content 0.46
exon number 2
gene id G1499
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6782413 ~ 6839409 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttggtccagggtcacaatatatggttttatttttacaaatgtcatTTCCATTTTGAAATGTGGTAAAAATTTTCATGACAAAGATGAAAAAGTGGAATTCTTCTGTGATGCATGTATACCTTTTAAGAACGTTTATTTCATAGAAGTTGACACAATCAAGCACACAAATCAAGGACAATCATGAAGTCCCAAAATGctccataataataaaaaaaaaactatataaattaaaaagacaagttAAATTTTTTATAGGTCAGCTTTAATGAGAATTAGGCAGATTGTGTTACATTCCTAACAATACTTCTTACAGTTCTTGTGttgcatcttgttttttttacccccatgtcttttaaatacattaatacactTAATTCACtcttttttttttttttttttttttttttttttttttttaaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251203.1 lncRNA downstream 292220 6487644 ~ 6490193 (-) True LOC122347249
TU2035 lncRNA downstream 368832 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 392776 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 454352 6327023 ~ 6328061 (-) False gng13a
TU1868 lncRNA downstream 556523 6224268 ~ 6225890 (-) False socs1b
TU2241 lncRNA upstream 14665 6854074 ~ 6854374 (-) True G1528
TU2242 lncRNA upstream 16386 6855795 ~ 6856108 (-) True G1529
TU2244 lncRNA upstream 18386 6857795 ~ 6858061 (-) True G1531
TU2245 lncRNA upstream 20480 6859889 ~ 6860266 (-) True G1532
TU2262 lncRNA upstream 119277 6958686 ~ 7002988 (-) True G1544
XM_043236570.1 mRNA downstream 11836 6766062 ~ 6770577 (-) True c1h7orf26
XM_043241215.1 mRNA downstream 20642 6714745 ~ 6761771 (-) True LOC122346519
XM_043241223.1 mRNA downstream 20642 6720461 ~ 6761771 (-) False LOC122346519
XM_043241941.1 mRNA downstream 188624 6589057 ~ 6593789 (-) True LOC122346986
XM_043241908.1 mRNA downstream 188697 6580204 ~ 6593716 (-) False LOC122346971
XM_043249001.1 mRNA upstream 519 6839928 ~ 6845456 (-) True LOC122351719
XM_043249006.1 mRNA upstream 2915 6842324 ~ 6845456 (-) False LOC122351719
XM_043249388.1 mRNA upstream 169189 7008598 ~ 7019036 (-) True LOC122351948
XM_043249776.1 mRNA upstream 225716 7065125 ~ 7069577 (-) True cnpy3
XM_043238204.1 mRNA upstream 232180 7071589 ~ 7134282 (-) True trpc5a
TU2105 other downstream 241030 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 314159 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 507662 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 668890 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 929169 5846076 ~ 5853244 (-) False LOC122346875
XR_006250919.1 other upstream 232180 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 322914 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 366175 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 379577 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1763891 8603300 ~ 8607795 (-) True G1926

Expression Profile