RNA id: TU3407


Basic Information

Item Value
RNA id TU3407
length 377
RNA type TUCP
GC content 0.40
exon number 2
gene id LOC122347856
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10844956 ~ 10981356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCTCTCAGGCTCGTGGACCCCGGGGTTGTCGCTCATCTCCAGCACGAGCAGCTCTCGGCCCTCGTAACTCTCGCCCACCGTGTAGATGCGGGTGATGGAGGGGCACTGGAGCCAGACGGACACCAGCGCTTTCCGCATCTCCTCATACCGGTGGTACTCGAAGGAGATGCCTCCTTCCCCCGCAGCATCCCCGCCTGAGGCCAGGGACAGCATCAGCAGAGCCCCGCAAAACACCGCCGCCGTCATCGCTCCCGTCTCGTCTCTCTTAGCGCCGCTGTCGGTCTTTCTCTCGTTTCTCTCCTGCGCGTCTGTCTCTCTGGTTTTCCGTGTCGTGTCCCGTACGAACCGCAGAACTGACGCGTGAGCGCGAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3431 lncRNA upstream 76711 10837625 ~ 10838465 (+) True G2352
TU3428 lncRNA upstream 77931 10835031 ~ 10837245 (+) True G2350
TU3429 lncRNA upstream 85646 10827685 ~ 10829530 (+) False G2350
TU3247 lncRNA upstream 541329 10372962 ~ 10373847 (+) True G2246
TU3213 lncRNA upstream 835706 10078885 ~ 10079470 (+) True G2219
TU3526 lncRNA downstream 219776 11201132 ~ 11201666 (+) True G2420
TU3538 lncRNA downstream 329237 11310593 ~ 11315354 (+) True G2430
TU3571 lncRNA downstream 357939 11339295 ~ 11341748 (+) True G2449
TU3576 lncRNA downstream 369544 11350900 ~ 11351657 (+) True G2454
TU3594 lncRNA downstream 401675 11383031 ~ 11383387 (+) True G2468
XM_043243113.1 mRNA upstream 49135 10844956 ~ 10866041 (+) True LOC122347856
XM_043243148.1 mRNA upstream 70831 10840428 ~ 10844345 (+) True LOC122347879
XM_043243188.1 mRNA upstream 180322 10723316 ~ 10734854 (+) True LOC122347952
XM_043243161.1 mRNA upstream 232216 10679587 ~ 10682960 (+) True LOC122347900
XM_043243052.1 mRNA upstream 415702 10490262 ~ 10499474 (+) True LOC122347771
XM_043243050.1 mRNA downstream 81256 11062612 ~ 11076698 (+) True LOC122347755
XM_043236779.1 mRNA downstream 122781 11104137 ~ 11121875 (+) True LOC122342727
XM_043236800.1 mRNA downstream 141724 11123080 ~ 11143007 (+) True LOC122342742
XM_043247726.1 mRNA downstream 314055 11295411 ~ 11302485 (+) True si:dkey-192k22.2
XM_043237533.1 mRNA downstream 415276 11396632 ~ 11401250 (+) True slc25a51a
XR_006251248.1 other upstream 426065 10483640 ~ 10489111 (+) False tlr3
TU3254 other upstream 517136 10397373 ~ 10398040 (+) True G2253
XR_006251240.1 other upstream 581504 10256662 ~ 10333672 (+) False fat1a
unassigned_transcript_4 other downstream 329037 11310393 ~ 11310464 (+) True trnap-agg
TU3862 other downstream 856275 11837631 ~ 11840166 (+) False LOC122350793
XR_006251287.1 other downstream 1663323 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 1663323 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 1704889 12686245 ~ 12690270 (+) False dnah6

Expression Profile