RNA id: XM_043236570.1


Basic Information

Item Value
RNA id XM_043236570.1
length 1936
RNA type mRNA
GC content 0.50
exon number 9
gene id c1h7orf26
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6766062 ~ 6770577 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAGCGAGTAAACGATGTCCTTTATGGGGTTCCGTAGTTATTTTATGATGAGCAACTTTCACATTGTCAGTTATGAGCGATATACATTTGCAGATTGAGAGAAGTTAATGTAACGAGTCTAATTATTTAACCAGTTTCTCCTCCAGAGCAGAGATGAGTGATATCCGGCATGCATTGCTGCGGCGTGATCCGCTGAGCGCGGCTAAAGAGGTTCTGTATCATCTGGACATCTCACTGGGCAGCGCCCTGCAGAGCTCCACGGGCCCCACGCCTGGACTAGAGAAGAGCACGGTGGATCTGGTGGAGGAGTTCATCTTTCACGTCTCTAAAGACAGGAACATCCAGCCTAAGAGAATGAGCTGCGTTCAGGAATTGCAGCTGCTGGAGATCATGTGCAGTTACTTCCAGGAACAGAGCAAAGACGCAATCCGACAGATCATTTTCTCTGCCCTCTTCAGTCTTCAAGGCAACAAGGCTGATGAGAGCCGCATGGCCATGCTTGGGAAGCTAGTTTCAATGGCCATAGCCGTGTGCCGGGTGCCCATACTAGAATGTGCAGCTACTTGGCTACAGCGCACACACTCTGCGTGGTGTGTGCGTTTGGCTCAGGTGCTGATGGATGATTACTGCACACTGGTGCCATGTGCCATCTCTACCCTGCAAAACATCTGTTCAGCCAGTCCTCGCTTTTGTTGTCAGCTCATCACCGCAATAACGGCTCTTTACGACTTCTCCTCAGATGAGTTGACTCCGCCCCCTGCGCTCTTGGAGATGCTGGTTGGTTGGATCACAGAAGATCCCAGACTGCTGCTCCTCACCTTTATCAACACGCCCCTAAACTCCAGCCTGCCATTAGGCTGCCTTGAGATCACGCCTCTTTTGGGTCTGCTCCGGTGGTGCGTGAAAGCTCCGTTAGCCTATCAGAGAGGCCGCAAGTCAGCTTTGACCAATGGCcatggagaaaatgaaaaaggcaCAGCATACGAAGAGCTGTACTCTAAATTACACTTGAGCGTTCTTCAAGTCTTTCTAATGCTGCAGGTCCACCTGACGGAACAGAATTTGATTGGTCGACTGGCTGTGCTTCCTGTGGAGTCTGTTGCCACGCTGGTAGAGGAAGTCAGCCGTCTGTGCGAGAAGCTCATGTCCCTCCCTGCTGCCAATCATATCCAGCTAGCACTGGATAGGCTGGCGCAAGCTCTTCAGGTCGCCATGGCAACAGGAGCTCTTCTGTGTGCCAGAGAGGACCTACGGACTCTGTGCTCCAGACTTCCCCACAACAATCCATTGGTGCTTTTCCACTGTGTGGCATGGCATGGCGCAATTCAGGAAAGCTCACTTTTCGTGGGTTTTCCACTGCATACAGTACTTGCTCGTGATCCAGTAGTGCAGCCTCCACCTCACAGCGGACCCTTCCAGCCCAACATGTACCCGCACATCCACCCGGGTCGGTCCTCCACTCTTTCTCCCCACAGCCCGCACCAGTCGGCCCTCCCCTCCCCACACAGCCCACACCCCGTACTGTCGGCGCACCCCACACACCCAGCGCTGTCCCCACATCGCCCGCTAACGGCCCACGCCGCAcacccttctctctctccacacgCCTTCCATCCTGCTGCCATGTCCTTTCCGTACCGGCCCATTCGTTAACCAGCAATACAGGACTTTTGGACTACTTTGCTTCTTCTTGGGATGAGAACAAacaatttttgttatattttatattagatctTCAAAACGTTTGGCTTGGTCCGGTTACATGGTCTTGTGTATCATAAATTGGGATATGCTTTGTATAATTTTAGGTTTGATAATGGACTTTAAAAAGAGCTTGTACAGATTAAGTgtttcaggtaaaaaaaaaggaaaaaagcagTCATaccttttaaacaataatattgtacaaaccttgaaatatatttttggaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251203.1 lncRNA downstream 275869 6487644 ~ 6490193 (-) True LOC122347249
TU2035 lncRNA downstream 352481 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 376425 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 438001 6327023 ~ 6328061 (-) False gng13a
TU1869 lncRNA downstream 540172 6224268 ~ 6225890 (-) False socs1b
TU2204 lncRNA upstream 11836 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 31717 6802294 ~ 6802755 (-) True G1519
TU2188 lncRNA upstream 65077 6835654 ~ 6839409 (-) True G1499
TU2190 lncRNA upstream 65077 6835654 ~ 6839409 (-) False G1499
TU2192 lncRNA upstream 65077 6835654 ~ 6839409 (-) False G1499
XM_043241215.1 mRNA downstream 4291 6714745 ~ 6761771 (-) True LOC122346519
XM_043241223.1 mRNA downstream 4291 6720461 ~ 6761771 (-) False LOC122346519
XM_043241941.1 mRNA downstream 172273 6589057 ~ 6593789 (-) True LOC122346986
XM_043241908.1 mRNA downstream 172346 6580204 ~ 6593716 (-) False LOC122346971
XM_043241917.1 mRNA downstream 177288 6580204 ~ 6588774 (-) True LOC122346971
XM_043242572.1 mRNA upstream 11956 6782533 ~ 6791869 (-) True pgap6
XM_043242581.1 mRNA upstream 11956 6782533 ~ 6791859 (-) False pgap6
XM_043241193.1 mRNA upstream 57943 6828520 ~ 6834082 (-) True rnf175
XM_043249001.1 mRNA upstream 69351 6839928 ~ 6845456 (-) True LOC122351719
XM_043249006.1 mRNA upstream 71747 6842324 ~ 6845456 (-) False LOC122351719
TU2105 other downstream 224679 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 297808 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 491311 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 652539 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 912818 5846076 ~ 5853244 (-) False LOC122346875
XR_006250919.1 other upstream 301012 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 391746 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 435007 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 448409 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1832723 8603300 ~ 8607795 (-) True G1926

Expression Profile