RNA id: XR_006251170.1


Basic Information

Item Value
RNA id XR_006251170.1
length 3940
RNA type transcript
GC content 0.44
exon number 11
gene id si:ch211-14k19.8
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6267663 ~ 6274751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGCGAGCTTCATAAAGTGAGCCGAGGTCGTTTCAACGCGCTTTCTGCGGCGGACTGAGGGAtgaacttgactcttctgtgaaggtctttaaaaaacagaaaaattatattagtcCTTGTTACACATACGTTTTTGACTAGTTAATATATCAACATCATATTTTAGAAttgttaaatgttctttatgGAATTAACTGTGGGGACGGATTCCTTCCTGGAATGTTTTGGCTCGCAAAATGCGTCGTTTCGTGTatcttttcttatttattttcgCTCCAGGTAACGCACTGTTGAACTTGAATCAAGACTGTGGAGGTAAAATTCTTGGAGAGAGGAGCGGCTCAATTCGGTACTCTTTACACTCAAACAGCCttttatttaacagaattaCCAGTGACAGCGCAGAAAAACTGTTGGACGTTGCCTGCACTTGGATTATTGATGCTTCTGAAAATCAGACTGTTCGGATAGAGGTCATTTCTGTTGGGAAAGACGCTCGTATTGGAATTAAATTTGGGAATGGGAATACACTGATTTATGAAAGGGAGGAACGGGCGTTATTCTCTGGCACTGGGAGAACCATCATTGAATGGAGTGTGAGAAGGACTGAAGAAACATTTGCCACATTACATCTGAgaTGGAACTCGTCAGAGGACCGTCACACTCTTGCTTTGATTCCTTACACCCACTCTGATGCTGACCCGGTGTCTCCTTCTCCAAATGGCTCCAACGATGTAACCTACACCCCTGACATTCCAGTGAGCGGCAATGCAGcccccaaaacacacactctcagggGTGAGAGTATACAGAAGGGCGGAGGTGTGTCTGACCTGGACGATAAGCGCAGACCTCTCTTTCCGCAGGAAATCACCAACAATGGACAGGAAACGGCTGAAGCCTGGATCTCCGACCTCACACTCACTAGCACACATTCTTATTCTGATACACAGACCGGCTCTGCCCTTGAAACACACATCAACATGCATACAATGTTGTCTAATGAACCTTCTTTATCTCAGTCTTCTACTGAAATCCAACCACCATTGGTGTCTGTACAAACTACACCCAAACAGATAACTGATGTGGCAAAAACAAGTGCAATTTTAACCACAAGTGATGTTGCACACACTGAACTGGATAGAGGAAGTTCACAGCCCacacataaacatgcatttaccaAAATACAgcccaaaatgacaaaaagagatGATCCAAGTTCAATGTTTCCAACGTCCAGCTTTATGACTGTAAGTCCGCATTATAATCAGCCATTTGATAAAACCTCTAAACAGTTTCTTGGTGACAGTTATTACAAGTCTAAAGCAACCACTTTGTTGCTCCCAAAAAGGGATGGGTTTACGATATCAGAGAATGTTGGGACAAGTCAATCTGATTCAATTTTTTGGAGTTCAAACACAATGACAGATGACAACCGACATATATCATCAGAGATGGACAGGACAGATCGCTCTCCAAGGTCAACTAATCCAgatcaaaacatcacaaaccaAACCATCTATGATGATTCAGAAATTACTACTAGGACGCCTGCTACTGTGTCAATGTTTCCAGATCAAACCCACACGTTAACATTTTCTGTTGAATACTCCATGTCTCCAAGCGAGCCACCAATAAATGTCACTCAGAATGAGCCAACAACCTCAGGCGAGATCTTGCACTCTTCATATAACCCACCGACTTTGACTTCTTTGGAAGCATCAACCACCCACGTCTCACACACCTTCCAAAATCAATACGATACAAGCACCCAAGAAACCAACTCCGCATCTGTGTCAATCTCTTACCAGACATCACACGACACAAACAAAATCAGTGCCTTCACCACCTTCCCAGCTGCCATCCTTCCAGACCTGAGTCCTACTGAGAGTCCTAGTACCCCAGAAAAGGATGAGGGTCTGTCACCATCTGTAAGTGATTGCTTTGGTCTTGCATGCACTTCGTTTTTACCATCTACAGTACAAGACAAACAAGAAAAACCCATCACCAGCTCTCCATCAATCTCTTTGTCGAGTCCTCAGATTAGTCCTaatgtgacctctgacctcattGTTGAAGAAAGTATTACAGTGGGATCTGAGAACCAGACTGATGTAGAAGAACTCGATGTTACTCCATCACAAGTCCAGATTACCAATACAAAATCAAGTATGCATACTGAATTCCCTGTATACACATCTACACCTCAGCATTCAccaacattttttgaaaacacaCAACGAAATGCGGGATTTTTCGATGCAACTGATATCAGTGAGATGAGTAGTGGTCAAACAGTGAGTGACCCTACTCAGACTGAAACAACAAGTACAAAGACCACACGAGACATTCATACTGAATCAACAGAAAACATGAATGGCTTTACTACTTCATTATTGGAAACCACAACTCCATACATCTCTCAGGTCAGTGCAACTGTTCCAACAAGCACATCTGTTAGTACCACCACTTCACATTGGGAAACTACAGAGGCCTCGGTGGTTCACAAACCTTCATTAACTACTCAGCAGATGAATCCACATGCCACGTCCACAGAAACGACTTCAGTCCAGGTCCAGACAGACTTTCCAGGACATAAACCCAGCACTGTCAGACCTCCCCAACATATGACCACAAGCTCTTATCTAATTAAGACAAAAGCATACACGGTATCTAAACAAGCAGTGACTCAAACATCTTGGATTCATTCTACTGTATCCAGCTTTGACAGAAAGTGGCCACATGGACACCATTATTTTATAGTGAACGACCAGCCAGCAATCATCAAGGagAAAACATTTCAAGTACTCTTACAGATTGTCCTGGAAGACGATTATGTCCCTAGTATGAGGTTGCTTGAGGTGGAGAAATTTCTGCAGAGCCTTTCTGGATTTCAAAATCAACATGTGAACTGGCACAGTGGCCCAGTTCTGCAAACACTAGTTCAGTTCCAAACAGTGGAAGCACTCTCCTGGCTAGAAAGGGTGGAGTCTCTGTTACAAGAGGCGGGGTTAAAACCACTGCCCAAGAAAGGAATACTTGTGGGTGGAGTTAGAGTGAAGAATATTACTGTGGGAGGTTTGCAGACAGATATTTGCGAATGGCTATTCGAATGTCCATCTGGGTTCCAGTGTGTTTCTTCAAAGGGAAATGCCACTTGTACATCTGTTTGCCACTCTGAATACTGCAAACATCAGGGCATCTGTGTCCATCGTCTCGGGCAGCAGCCTATGTGCCAGTGTCCCGTTGGAGAGGATTACTGGTTTATGGGCCAGCGCTGTGACCTCCGCATGACCCGGACGCGTTTGGTGGGTGTGTGCTTCGGAGTACTGGTCGTTGTCGCAGCAGTCATTGTTCTTCTGTCTTATCTCACAGTGCGCCGTTTTAAAACCATGCTAATGCAAGCCAAAGTGGAACAAACACGCAGCAGTTATCGCAGATTTAATCACTTCGATGAGCTTTCGGCTCGCTTTTGGGGAAGATCCTGGCCCGGCTCTGAGGACTCGTTGGATAACCCTGCCTTCACCCGCTCTGATGAACTGCTACACTTAAGAGCACTTGACCGTACCTGCTGTTACCACGATGACACTCTTTCTGTGGTATCCACATACCACGTTCTCAGTATGGTTGGGATCTTAGCAACTGTAGCTTGGCGGATGGTGTGATGGATTCTGGGAAGGCTAGTGACCTGTCAGTCTGTAGCTGGCCGATCGAGCCCATTCAGTGGACGCCATTTCCATTGCTGCAGCAGCTCAACAGGAATACCACTACGGTAAAAGTGTCCCGTCCCCGCTCTTACTGTGAAGGCATGGAACTTGTAGATTTAGAGAAGAGCTGGACAGCATAACAAACTCTGGTCAAGTGAGAGAATATTTCATCTGTTTCAGGAACACCGTTGTTGTTGCcaaacttaataaaatgtattttaagtgaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868 lncRNA downstream 41773 6224268 ~ 6225890 (-) False socs1b
TU1869 lncRNA downstream 41773 6224268 ~ 6225890 (-) False socs1b
TU1867 lncRNA downstream 49074 6218244 ~ 6218589 (-) True G1288
TU1861 lncRNA downstream 53116 6213641 ~ 6214547 (-) True G1282
TU1847 lncRNA downstream 154140 6111463 ~ 6113523 (-) False G1270
TU2016 lncRNA upstream 52272 6327023 ~ 6328061 (-) False gng13a
TU2031 lncRNA upstream 114669 6389420 ~ 6389637 (-) True G1394
TU2035 lncRNA upstream 138631 6413382 ~ 6413581 (-) True G1398
XR_006251203.1 lncRNA upstream 212893 6487644 ~ 6490193 (-) True LOC122347249
TU2204 lncRNA upstream 507662 6782413 ~ 6839409 (-) False G1499
XM_043242322.1 mRNA downstream 41549 6220604 ~ 6226114 (-) False socs1b
XM_043242305.1 mRNA downstream 41549 6220604 ~ 6226114 (-) True socs1b
XM_043242313.1 mRNA downstream 41743 6220604 ~ 6225920 (-) False socs1b
XM_043242331.1 mRNA downstream 44922 6220604 ~ 6222741 (-) False socs1b
XM_043241594.1 mRNA downstream 62517 6138623 ~ 6205146 (-) True grin2ab
XM_043242379.1 mRNA upstream 2306 6277057 ~ 6280616 (-) True ndufab1a
XM_043241605.1 mRNA upstream 6422 6281173 ~ 6288577 (-) True palb2
XM_043241694.1 mRNA upstream 25165 6299916 ~ 6312773 (-) True ern2
XM_043242402.1 mRNA upstream 52323 6327074 ~ 6328341 (-) True gng13a
XM_043236339.1 mRNA upstream 54910 6329661 ~ 6330527 (-) True LOC122342505
TU1845 other downstream 154140 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 414419 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 490006 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1968470 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 2253376 4007840 ~ 4014287 (-) True G782
XR_006251174.1 other upstream 183300 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 264777 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 796838 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 887572 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 930833 7205584 ~ 7295633 (-) False dmd

Expression Profile