RNA id: XM_043241703.1


Basic Information

Item Value
RNA id XM_043241703.1
length 4033
RNA type mRNA
GC content 0.47
exon number 17
gene id ubn1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6339847 ~ 6350501 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGGGAACGGTGATTTTGGAAATAGTTGTGGGTGTCCATATCAGTGATGAAATTTCTCTAGTAACAACGCATCGCTACTAATATAACTGATCGTCAATACCACATCGAACCAATACGGAGCCTCGTGATCGCCAAGGTGAACCGTCGAGCGATACAAACCGGAgatttaaaaaaccaaaaaaaacaaaaacgactCCCGTCTCCCGTTTGCGCTTTGCATCTGAAAACGACAATTCTCCATTGCCATGATAACTCAAGCGAATGCTTTGTGGAGAGCATCCGACTATCGGCGTGACAACGGCTGCGCGCTTCACCGAGGGCCGCGGAGATAGAATGAAACGAACGCTTCCGAAGAGACTGGACGTTAGAGAATTCATCAGAACATGCCGTACAAGACGGCGCCTCAACGATTCACCGTTACATGACATGGATGAACATCCGtgGCTCATAATTAATCAACCAAACGCGCACCTGTTCGGGAAGAATCGCGGAGTGTTGCTGTCGGTCTGAGCAATGGCCGCGCCGAGAAGAATTCATCTCACCGCACTCTCAAGCAATGCACGCTTTCCTCTTCCCACCGTCCCCAGTGCCACCGACCAGCCCGTCAAACAGGGCTTACCGGCGCCGGCACCCCCGCATCCTTCAACGAGAGTGGAATTAAAACTCTTCGAGTCGAATGAGCAACGCTGCCCGGAGTTTAGCTACCCGGATTTGATCAGCgcaaaaGAAACCACTGAGATAAAGAAACCTCTAACGTTAGATGAGGTTGTGGAGAACCAGGAGAGAGATGAACTGGAGGTGCTTGTAAAAAAGTTTGAAGCAAAATATGGTGGAGctggcaaaagaaaaaaagaccgTTTACAGGATCTGGTGGATATGGGCTTTGGTTACGATGAATCCGATTCATTCATTGACAACTCTGAGGCCTATGATGAGCTTGTCCCAGCTTGTCTCACCACCAGATACGGAGGCTTCTACATCAACTCTGGAACGCTGCAGTTCCGGCCAGCGTCTGATGAGGGAGAAGAGAACGAGAATGACTTTGAGGGCAGCGGTTTTAAACCTAAgAAACGAAAGCTTAAGCAAGGAAAAGACAAGAAGAttgggaagaaaaagaaagaggaagacaTGCTTGCTAGGAAGGAAGAAGAGGAAGCAAGAAAGAGGTTTTCGCGGCTGGATAGATTAGTGTTTACTACCCTGAAGAAAACACACTTTCCAAAATATCCTATAGGAGTAATCATTGATTCTTTTATAAATGCCCTCATTGTTTGCTTTTTCCTTCTTCTCAGCACCCTGCCAGACAAATCGTCTgcgaagaagaagaaaaacaagaagccGCTGAGCATCGACAAGATGCTGAAGAAGTTCCACAAGGAAAagctccagcagctgcagatGTTCAACtctagagagagagatgctcaTGCTCTCAACGACGCCATGCAAGCTGAGGTTCAAGAACCGCCCATATCAGCTGACCCCCTTCTCACGCTTATTGGTTCTGCCAGTGCAGATGACCTCCTTCAGGCGGTCAAAGCAGCAGAGCAAGACTTTGACTTAGATGGACTCCTGGGGGAGCCGCAGAACATCTGCTCTCCAAGCCTGGAGGACAACAGAGAGGCTCTGGTAGTGTCCGTCACTGAGAAACCCCCTACATTACTTCCCGATGGTCTGCCGCCTATATTAGAGGAGCACATTAAGGAACTTTCCCAGGCTGTCAAGAAAATTGAAGGGCAAAACAAGATGGAAACTTTGTCTTCAGAACTCAACAGTGTTCTGCTAGATGTGGAGGTGAACTCTAAACAGCTTAGCGGCAAAGTGCGCTCCAGAATCTTCTCCTATTTGGCATCACAGCTGTCCTGCAGCAAAGGCACTCTGGTTAAAAGAGCCAAAAAACTCCACAGTCTACAGCAGGATGAACAGCTGCGGGAGCTGCTGAAGAAGCTGGAGAATGCGGTTGCCAGGTCCATGCCAGAACAGATCACCCGTTTCCAGAATCACTGCCAAGCTCACTCTGAAGCCAGAGCTGCCAAACTTGAGGCTGAGAAAGAGAGGGTGATTGATGGctctgatgaagaagaagaggaaaggAGTGGAAAACGAGTGTTCGGGCCTCGCAAGAGGTTCAGATGGAACGAAGAGATCAGGGAGCTGCTCTTTGAGATCGTCAATTTGAAGATGATTATTTATGATTCCGAGTCGCTTGCGTGCTCTAGTTTGGAAGAGTATCTGAAAGCATTCCTAGAGGCCGATGTTAAACCACTTTGGCCTAAAGGATGGATGCAATCCAGGATTTTGCTTATAGAAACACGAAAAGCCCATGGCCACATTACTGGTGTTGTggCAAGGAAAAAGCCAATAGgtacaacaaaactaaaaaagGTCAGCTCCACCCCTGAGGATAGTAAGAATAATCCAGAAATTCAGGGCCCACCAGCACTTAAACGCAAACGCTTGAGCGTACCTGTGAGCATGCAACCCGAAGCCACGCTGAGCACCACTGCCAAAACCccctcaaacacacaaacatctgCCGCCTTCTCCACCCATCTTCCTAATCAGAACCACAAGGAAGGTAACAAGATTGAGAACCATCATACCAGCACTCAGAGAAGTCCGGTGACGGCAGAGGGAGCTGGATCAGTCCAGATGATGTGGAGCAGGTCTGCTGTGGATTCGGATTCAAAGCGGCTCCAGACTGGAGAGAGGGCGACTCCAAAACTGACGCTGGTGGCTCCGCCGGATGGTGCTGAGGGAGACTGTCCGTCAGTGGTGCAGGGAGTGGCCAGGCTGCTCACCACGACCTCAGTGGGTGACACGCCAGTTTCTATGGCAGCAGCAGCCGGTGAGATCTCCTGTGGAAACCCAGCTCTTCCCACTCCTTCTCTATCACTCCTTCCATCCTCTTATCCCAGCACGGTACAGCCGGGGGTTTTACCGAGCTTTGCCCCCCTGCATGCTCTCCCGTTCCCTGGGCTCAGCCCTGGCACCAAACTCCCTGGACAGCCTCAGGCCTGCAAAGGAGCTGTTTTTCCTGGCCCAGCAACTGGAAATTTCCAGCATGGTCTCGCACACGGTAACTCCATGCTGTGCTCTAGCACGCTTCATCTTCTCTCTGTCCCtgtttcttctcctgctcctctTCATTCTTTAACACCATGGCTCTTTGGTTTAGATGGAAGCCAGATGCACACAGATGGTCTAAATGCTCGGAGAAAGCTACATTAATGGCCattagaatgaaatgaaagatggcTGTTACCTAAAGCAAAATCTGCTACTTTTCGTATGATTATGAAGATGGAGCTGACAGAACGTGGATctgaattcaaatttaaaagagAAGATTAGGAGACatttaatttgtatgttttagaatcaatctttttcaaaaaaagtttatttggataaaaaaaaaaatgcacttattgAAAATGGACATAAGGACTATATCtataaatctttttgtttttcacagtaTTGATTATATTTAGAATGATTTGACCAGCCGTGTGACCTCAGTGCAGTGATATGCACTTGTAACGCACTTACTTTCAACTTCTAAGGCAGATATTTCTGTATTCTACACCTCCTTaatttccatctctctctctctctctctctctctctcagagggGATCTACCAGTTAAGATCCACAATCCTAacttatttatgaaattaaatgaacgGTTAATTCCAGGTGGTGTGGGTTTCCACGCTACAGtgttattttcaaatacatGTTTGCATTGAAAATATAAAGGAGCTCAGAATCTGTTGTACTAGTCAAAGCCAGAGACTgcactttttcttgttttcttgatgttgttgttgttgttggactGGGTAATGAAAATGATGCCAGTGTAATGATCTCAGGGCTGTTTAAGTACGGTGGCCGAGTTATTGAGTAATGCTGCAATATATGTAGAGAACATGCACTCGCTTTTGTTTTTGAACTTACTGAAAAATgactttgaaaaaatatttgaaggtGTAATGTGGAAATAAAGTTTCCTAAAATATTC

Function

GO: NA

KEGG:

id description
K17492 UBN; ubinuclein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2016 lncRNA downstream 11786 6327023 ~ 6328061 (-) False gng13a
TU1868 lncRNA downstream 113957 6224268 ~ 6225890 (-) False socs1b
TU1869 lncRNA downstream 113957 6224268 ~ 6225890 (-) False socs1b
TU1867 lncRNA downstream 121258 6218244 ~ 6218589 (-) True G1288
TU1861 lncRNA downstream 125300 6213641 ~ 6214547 (-) True G1282
TU2031 lncRNA upstream 38919 6389420 ~ 6389637 (-) True G1394
TU2035 lncRNA upstream 62881 6413382 ~ 6413581 (-) True G1398
XR_006251203.1 lncRNA upstream 137143 6487644 ~ 6490193 (-) True LOC122347249
TU2204 lncRNA upstream 431912 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 451793 6802294 ~ 6802755 (-) True G1519
XM_043241973.1 mRNA downstream 1528 6333937 ~ 6338319 (-) True zgc:136472
XM_043236339.1 mRNA downstream 9320 6329661 ~ 6330527 (-) True LOC122342505
XM_043242402.1 mRNA downstream 11506 6327074 ~ 6328341 (-) True gng13a
XM_043241694.1 mRNA downstream 27074 6299916 ~ 6312773 (-) True ern2
XM_043241605.1 mRNA downstream 51270 6281173 ~ 6288577 (-) True palb2
XM_043241782.1 mRNA upstream 88534 6439035 ~ 6452642 (-) True micall2b
XM_043241771.1 mRNA upstream 88534 6439035 ~ 6451623 (-) False micall2b
XM_043241774.1 mRNA upstream 88534 6439035 ~ 6451210 (-) False micall2b
XM_043241672.1 mRNA upstream 105543 6456044 ~ 6468250 (-) True gaa2
XM_043236352.1 mRNA upstream 183000 6533501 ~ 6544558 (-) True LOC122342514
XR_006251170.1 other downstream 65096 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 226324 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 486603 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 562190 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 2040654 4298310 ~ 4299193 (-) True G820
XR_006251174.1 other upstream 107550 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 189027 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 721088 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 811822 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 855083 7205584 ~ 7295633 (-) False dmd

Expression Profile