RNA id: XM_043241771.1


Basic Information

Item Value
RNA id XM_043241771.1
length 3578
RNA type mRNA
GC content 0.45
exon number 17
gene id micall2b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6439035 ~ 6452642 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAGGGAAGTCCTTTATAAAACGTTTACCTACGACTCCACCCATAAAGACGTCATAACTTCTCCGGAGTTTCGGGGGGTTCTCCGTCGGGACAGCTGACGGTGAGCTCGCTTGAGTGGGTGAGGGAAAATCAAACGCGTTCCACGGTTCGGCGTTCCGTTTGCGTGCGGGAGCGATTCCAGATTCGTCGTTCGGTTTAAAGCGCTCCTCCCGGGTTCGGTCGTGTCCGCACCATGGCTGCTGTGAAGGCGCTTCAACAGTGGTGCAAAATCCAATGTGAAGGATACCGGGACGTGTCGATCACAAACATGACCACATCTTTCCGGGACGGTCTGGCTTTCTGCGCTCTAATTCACAAACACAGACCGGACTTGATAGACTTCGACTCTTTGAGCAAGGAAAATATctatgaaaacaataaacaggCATTTGAGGTGGCAGAGAAGGAGTTGGGTATACCTGCTTTGCTGGATGCCGAAGACATGGTGGCTTTAAAAGTGCCTGATCGCCTCAGCATCCTGACCTATGTGTCCCAGTACTACAATTATTTCCACGGACGCTCTCCTATTGGAGGTATGGCAGGGATTAAAAGACCAGCTGAAGAGTCTAATGAAGCGCCATCCGAGAAGAAAAACCCACCTGTCACGGCTAAAGTTTTTCCCTCCCCAAAACCAGTCACGGAGAGCAAGACGCCAAAACCGGTGAACGAAAACAAGAGAGAAGTTTTGGCGGAACGTGCCAATAAAACAACTCTGAGCAGCAGTTGCAACGTGTGTAACCAACATGTTCACCTTGTGCAGCGCCACCTAGTAGATGGGAAACTGTATCACAGGAGCTGCTTTAAATGCAAAGAGTGCTCCACTATTCTTCTCTCTGGCACATACAAGCCTGGAAAAGAAGCGGGAACTTTCATCTGCAAGACACACACAAGCATAGAGAGGCCTGCAGCTGTCCCAGCCACAAACATCACGGTGACTTCACCGAAGACACCATCCACATTCATAAACAAGACTGACCAGAATGTTTCAGGAGATACTGGAAAAGCTGGTCTAACTCCTAACGCATCTAAATTAAGCTGGCTGTCCAATAAAAGTGACCGTGCACCCACTCGTGAAATAATTGCCACGCCTACTCCAGCGGTTCGGCTCACACCAGCATCAAAAACTACTCCAACACCTACAACTGTGAAGACCTCCTTCAGCCCCCGAACACCCACGGAGTCTCCTACACCAGTAATCAATAGTGTACAGAAGAACCAAGAAGCCAGAAAGAGATTCTTTGAGTCCAGCGGCAATCCCAGCAGTATTGTGCCTGCCAGTAAGAGCACCTCATCACACACTTCAACCATATCTGTCAGTACAGCAAGTGCTAAAACTCCAGAAATCACAGCACCTAGAGCCACTGAAGGAGCCACGGCTGGTAAAGGCAGAGTCCTGCTACGGGTGGGAGACTGGACAAAAACACAGGACacagaaaaagagaaggagaaTGAAAAGGAGAAAGCCAAAGCTCTAATCGGCAAGATGGtgactgtggaaaaaaataacaacaactcGTCTCTGAGTCCAGCTGGGCTGAAAGCTAACAACAGTAATGTTTCCCCGGTGGAATCGGGTGCTAAAGGCCCCTCAGGTAGGGTGCGTCTCAGAGCACTGGATACCAGCGTGGAACCTACTGCCCCGGCTGCTGCAGCGCCATCCTGGATCAGAGATAAAACCTTAAATAAAACCGCCAGGCCTGCGAGCACGCTGTCGTCCAACAGCAAGGAAAACGATACAGCTCCATCTGATTGGAGGTCCATGCTCAAGCCTGTAAAaACTGTCGGTTCCACAGAAAACACTAGCTCACCCTCCAAGAAGCCGGAAGCAGCTTCCTCTCCACGCACATCAGGTCTAGGAAGTTCGCAGACATCTGTTCCTGCACCATCTAACAAAAACATCTCCATTAGCATCCACACACCCAACGCTCCCTCACCTAGCCCTAGGAAAAACGGGCCTAAATATAGCGACTCCAGCAGTGGCAGCGTCGTATCTCCTGTTAGTCCCTCAGAGACTGAAATGCATAAATTGCACAAGCCCGGTTACATTCCTAAGGAAGACATTCAAAAAGAACTTAAGGAAATTGAGATGAATATGAACGAGTTGGAGAAAAGAGGAGTCGAGCTGGAAAAACAACTCCGGCAATGTGATGAGGAAGGAGAAGAGGACACATTAATGAACGACTTAATGGTGGACTGGTTTACCCTCATCAGAAACAAACAGGTCTACATGAGACGTGAATCCGAGCTTGTGTACATTGCCAAGACACAGGATCTAGAGGAAGAGCAGCCCAGTGTCGAGGCAGAACTCAGGAAACTGCTGGACAAACCAGAGCACATGAAGACTTCTTGGGACCGTAAACGAGAGGAAGAGCTGATGGCCAAACTTGTTGGGATTGTAAATGACAGAAATGCAATAGTGGATGGGCTGGATGAAGACAGACTGAGggaggaagaggaggacgagCAGCTGAATAAGATGATGCAGAATCTCGatatgaagaaagaaaaagggaagAGAAAATCCATATCCCGGTGGTTTAGTCTGAAAAGTAAACGGCCATCCACAGAGGACTGATCTtcatgaaagtgtgtgtgtgtgtgtgttttctgtcccaAACCGAATGTTTCAGCAGCAGTTTGAGGTCAGATCACAAAGTCTTAATTGCAGTAACGCAGCCttcaacaaatgtttttttttgtgaaatcgCATCATTATGTATTTTCACACTTTATTCCCCCCCACAtactttttgcacatttttttgaatGTCTCCTGTCATTGTGGGTGTGATTTGTGCATCTGTTAGCAAACGTTTTGCACTTGAATCCTTGGTATAATGTCGATTGTCTTTCAGTCAGTGTTTCATTAGGGAATTGGACCGTTTTGAGAGAAAGGAGATCTTTAAGTCATACTGATTCATATTGGATCAAGGTTGAAAATGGATGGGTTAAGATCTGACCCAAACTGAATTCACTTTCTTatacttgacttttttttacagtatatattaaattgGGAATAtgacttatcttttttttactggaaatgATCTTGTTTGATGATTTTAATGGTGTATTATCTTGGCACACTTCTGCTGTCTCAACAGCAGGGGGCAGACAGTGACTGATTTCAGCCACAGGACACTGTATGCACCCTGGTTTCTCTACAAACTGTGACAGAACTGATTTAACAGGGCCTTTTAAGAAACAATTTAGGATTAATTTAAGAGCCTGTGTTGTTTCTTTGaccacatgcttttttttaaccactgtccaggtagatttttatttatttttctgggTTTTCCTTAAATATGAATTGTCTTCATATGATCtgcactttttgttttaaatgttctcgTTTTCTTTTCGCTGTATTTGATGAAAAGTACATCTTAAACCGTTTAGCTGTTTGGGCCAAAGTAGTTGCCTAACTGTTTGTAATTTAAGCTAAAAGGTCTCTTTTTAACCCAGTATTCAGTGCCCAGCATTTAATTcaaacgtttttattttgtgtacaATAAATTTTAATAGTCAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035 lncRNA downstream 25454 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 49398 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 110974 6327023 ~ 6328061 (-) False gng13a
TU1868 lncRNA downstream 213145 6224268 ~ 6225890 (-) False socs1b
XR_006251203.1 lncRNA upstream 36021 6487644 ~ 6490193 (-) True LOC122347249
TU2204 lncRNA upstream 330790 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 350671 6802294 ~ 6802755 (-) True G1519
TU2188 lncRNA upstream 384031 6835654 ~ 6839409 (-) True G1499
TU2190 lncRNA upstream 384031 6835654 ~ 6839409 (-) False G1499
XM_043241711.1 mRNA downstream 88534 6339847 ~ 6350501 (-) False ubn1
XM_043241703.1 mRNA downstream 88534 6339847 ~ 6350501 (-) True ubn1
XM_043241716.1 mRNA downstream 88535 6339847 ~ 6350500 (-) False ubn1
XM_043241973.1 mRNA downstream 100716 6333937 ~ 6338319 (-) True zgc:136472
XM_043236339.1 mRNA downstream 108508 6329661 ~ 6330527 (-) True LOC122342505
XM_043241672.1 mRNA upstream 4421 6456044 ~ 6468250 (-) True gaa2
XM_043236352.1 mRNA upstream 81878 6533501 ~ 6544558 (-) True LOC122342514
XM_043242391.1 mRNA upstream 94338 6545961 ~ 6547468 (-) True LOC122347228
XM_043241908.1 mRNA upstream 128581 6580204 ~ 6593716 (-) False LOC122346971
XM_043241917.1 mRNA upstream 128581 6580204 ~ 6588774 (-) True LOC122346971
XR_006251170.1 other downstream 164284 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 325512 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 585791 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 661378 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 2139842 4298310 ~ 4299193 (-) True G820
XR_006251174.1 other upstream 6428 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 87905 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 619966 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 710700 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 753961 7205584 ~ 7295633 (-) False dmd

Expression Profile