RNA id: TU109951


Basic Information

Item Value
RNA id TU109951
length 2212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G74306
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2191090 ~ 2193301 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAACAgtgtttgcttttaataaatagtactttaatacaaaaaaacatttaaaaacaccattACAGATGATGTATTGCTTTTTAGAAACCACACAAACCTTGACCCCAATGGGAAATGACAGTAAAATCAAGTTATTATAATCTTATTTACCCCCTTCTTCCTTGATCTGGATGGTGTAAGAATATTTAAGCTCATTTGCACTGTTTTAAAGTTAataattaactttattaatttattgttgtaataCATTTGTTGTGAAACAGGCAACTTTGTTTTGTACTTCCAGACTGAAGATATGCTCACTGTCCTACAAGAAGCAGCTGAACATTTATTACACAACGGCGGAAAGTATATGCgatatcaatatataaatgcaaaaacaaaaatctaggTATTTACCACAGCAaacttgatttgatttgatttttttggagGAATATACTTCGTGTCTATCGCTTCATTGTTCACATGACTCATGAATCAGCTGACAATTCAAACATGCTGCCCAGCGTGCAATGAAGATAAAACTGAAACAACCAGTATTACTAGTTACACAGCATTGCAGACCTCTTTTGACTGACTTCAGATTGTTTTTCCacagcaaaagaaaatattgcaCCATTCGTTGTTCAGATGAGCTCAtttttatcttgctttattATAGTGATATATCAACAGCTTATATCTTCCATTAAGATGCATGAGTTGATTTTAACCTGCATCTGCTACTGGAAGTTacagtttttgtatttacaacTCTAAAAACCTTCATTTCGCTTAGCTTAAAAGTGCAACAGGCTAGCACAATCAGTAACTGCTGTAAACACGTAAAATACTTGTTAAAGTAAGAAAAAGACTGGTGCATCGAGTCATCTgcactcttagaaataaagtttttgttgtgCAGTGATTCCATAGAACAGTGTTTCCCAACCACGTACACTAAATGTTTTCCATGTCtctttaatcaaacacacacacacacggtgtgAGACTCTGAGACTTGAAAAAGTGTTTCAGACGAAGAACAGATTCAAAATGTGCAGTGTAGGTTGGCCTCCAGGAAcatggttgggaaccactgccatagaagaaccttctTGGGAACCTAtcattgaaaacaaaacaaaatcttcTATTGTACCCTATAAATCTACATATAGAGAACTTTGCGATCTCTGCAATCCAAAGGATGTTCTAAATGGAACCACAGGTGACAAGAAAGAACCTTAATTTAGTGCAGTTGTTCAAACGTCCCTCAGGTCTTTAGCAGTTGTTACATCTCACAAAATGTTCACAGCATGTATCGACTAAGTTAGCAGTTTCACAGATCGGCATCGTAAGGTCTTCCGGTGTAGGACGTGTTGACGGATCCTCTGTCTCGGGGCTTGGCTCTTGGGAAGTCCAGGTCGTCGTCCAGGGACTTCTGCGAGTACGGCACGCTGCTTTCGGTGCTCTTGCTGTAGGTTCTGTGCATGTTAACCCTGGGCAGAGGAGTGGGTCTTTCCGTTGCCGGCCGCCATGTTGTGGTGCTTCGAGGCTTTTCTCCGCGATTGCGTCCACCGCAGCAAGAGCAAATCCCGAGGAACATCACGAAACCCCCGAGGACCTCCATGATGCCTCCGATGTAGCCCAAAATGATGCAGTATCCCACTCGAATGTCATCCGGTCTGTTTGGATCTCTTTTGACGGAGGTGGAATTGATGCTGTTGAGGATATTAGTGTACCACGCAATGGGAATGATGGTCAGGACTCCGGAGCAGAAGATAAGGAGTCCACCCAAAGAAGCCAGTATCCATCTGGGTCTTTCCCTCCAGCATCTAACTCCGGGTGTTGCCACCGCAAGGCCAAGCGCCGTCACAATCAACGACGCGACCATCATTCCTTTAGCGATCGGAATGATCTGGCTGTTAAAATAAATCTGGTCGTTGCCTTGATTGTTGCACTGTTGGGTTCTGGACGTTGTGTAGGTCCTGCAGATGTCCCAGATTCCCTGTTCCACCACCAGATCCGAAGCTTCGTTCGCCAGGTTGTTGATGGTGCGCCAGTTGGGCGCGACTGTGCTGGTTAGGTCAAGGATCCATCCACAGGGGGCCAGGACCATGCCGAAAATCAGGATCCCCGGAGTCCGCATGGCTGAGGGTTGAGCTGCTGTCTCTTTCTGAAGCGAGTCGAGAGTGTCTGCTGCTTAAGAAGAAACATACTGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109968 lncRNA downstream 932 2187668 ~ 2190158 (-) True G74320
TU109967 lncRNA downstream 11657 2179206 ~ 2179433 (-) True G74319
TU109965 lncRNA downstream 16727 2171007 ~ 2174363 (-) True G74317
TU109962 lncRNA downstream 20541 2169319 ~ 2170549 (-) True LOC122352691
XR_006251908.1 lncRNA upstream 784 2194085 ~ 2197429 (-) True LOC122352692
TU109989 lncRNA upstream 54847 2248148 ~ 2250881 (-) True G74324
TU110014 lncRNA upstream 156034 2349335 ~ 2349691 (-) True G74346
TU110013 lncRNA upstream 157160 2350461 ~ 2350666 (-) True G74345
TU110032 lncRNA upstream 259857 2453158 ~ 2454862 (-) True G74364
XM_043250219.1 mRNA downstream 5047 2181795 ~ 2186043 (-) False parm1
XM_043250218.1 mRNA downstream 5047 2181795 ~ 2186043 (-) True parm1
XM_043250212.1 mRNA downstream 68217 2107110 ~ 2122873 (-) False sh3bp2
XM_043250223.1 mRNA upstream 5682 2198983 ~ 2228990 (-) True si:dkey-88l16.3
XM_043250121.1 mRNA upstream 158362 2351663 ~ 2360133 (-) False katnal2
XM_043250119.1 mRNA upstream 158362 2351663 ~ 2360133 (-) False katnal2
XM_043250120.1 mRNA upstream 158362 2351663 ~ 2359893 (-) True katnal2
XM_043250128.1 mRNA upstream 167467 2360768 ~ 2363564 (-) True sigmar1
TU109557 other downstream 703082 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 703175 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 703175 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 717212 1466751 ~ 1473878 (-) False G74031
TU109952 other upstream 814 2194115 ~ 2197311 (-) False LOC122352692
TU110254 other upstream 1144087 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1408311 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1712313 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1712313 3905614 ~ 3912742 (-) False LOC122352741

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04227914_04228723.mRNA True 2024 mRNA 0.43 1 CI01000304 4227120 ~ 4229143 (-)