RNA id: CI01000304_04227914_04228723.mRNA


Basic Information

Item Value
RNA id CI01000304_04227914_04228723.mRNA
length 2024
RNA type mRNA
GC content 0.43
exon number 1
gene id CI01000304_04227914_04228723
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4227120 ~ 4229143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGGTATGAATGTGGATAAAAGGTGAAACATATGTGAAAACATCTATTTTAAGACAATTTTGAACTAGGTGACTAAAACCAACACAGACGACCTGCTAGACCGAACAAACATTTATGCAGATAACCTTTTGACTTGAAACCTCACTGGTACTCAGGTATAACCACTGTAAATAGCTTTTCTCTGTGACAACTTGCCCCAGTCTACCCTATTTATCCCCTAGCTCTTGCATGCTGGTATTCCAGGTATTGGCTGAAACATGGCATGCAGTAAAAACCAGTTTTGTCTGAGGCATTCAACACCACACCCATCAGATGCTAATCAGACGGATCCACCTCCTCCAGGTTTCAGTATGTTTCTTCTTAAGCACCAGACACACTTGACTCGCTTTAGACGGGGACAGCAGACCAACCTTCAACCATGCGCACTCCGGGGATCTTGATATTCGGCATGGTCCTGGCACCCTGTGGATGGATCCTAGACCTGACCAGCACAGTTGCGCCCAACTGGCGCACAATCAACAACCTGGCAGGCGAAGCTGTGGATCTGGTGGTGGAACAAGGAATCTGGGACATCTGCAGGACCTCCACAACATCTAGATCGCAACTGTGCAACCAGCGTACCAATGACAAAACGTACTTTGACAATCAGATTATTCCGATCGCTCAAGGAATGATGGTTGCGTCTTTGATCGTGACCATACTTGGCCTGGTGGTGGCAACACCTGGAGTCAGATGCTGGAAGGACAGACCAAGGTGGATCCTGGCTTCTCTGGGTGGCCTCCTCATCTTCTGCTCCGGAGTCCTGACCATTATTCCCATTGCTTGGTACACTAATCTGCTCAACAGCATCAACTCCACCTCGGTCAAAAGAGACCCACTGAGACCGGATGACATTCGTGTAGGATACTGCATCGTTTTGGGCTACATCGGAGGCATCATGGAGGTCCTCGGTGGTTTAGTGATGTTCATCGGGATCTGCTCCTGCTGCGGTGGACGGAACCGCGGAGAAAAGCCTCAAGCCAAAACAGAAAGGCAGACGACCAGGCCGGTGGACAGACCGACGCCTCTGCCGAGGGTCAACATACCGAGAAGCATCAGCAGTAGAAGCAGCGTACCTTACTCGCAGAAGTCACTGGACGACGACCTGGACTTCCCAAGAGCCAAAACCCGGGACAGGGAATCTGTCAACACTTCCTACACTGGAAGACCTTACGATGCTGATCTGTAAAATGATTAGCTTAGTTACTACATACTGTGAAGTGTCAATATTTTACTACTTTGTGAACATTGACAACTGTTAAAGTCATGCTAGCTGTCTTCAACTGGAGCGTACACGTGTTACACCAGTCTTTTTCTTACTTTTACAAGTGCTGTTTACAACAATTACTGATTGTGTTTGCCATTTGCACTCTGAGGTTAAGTAACATGAGGGCTTTAATTTTAGAGTTGTAAATAGCCAAAATGTAACTTCCTGTTGAAGGTTTGTAATGCGGGTTAAAATTTGACTCATTTATCTTAATGGAAAATATATTAATACTGCAGGATTTGAGAAAAATTAATTGTGCAATATTTTCTTTTGCTGTGTGAATACAACCTAAGCTTAGTCAAAAGGGTTATCGGGGCTTTCTGTGATGCAGTATAACTAGTAATACTGGTTGTTTCAGTTTTATCTCCTCTGCAAGCTTTGCAGCATGTGGGTCATGTCTGAACTGTCACAAGATCCATGAGTCATGTGAACAATGCAACGATAGTCATGAAGTATACTGTATATCCATAAAAAAAAAAAAATATATATATATATATATATATATTTTTTTTTTTTAAACCTATAGCTATACATACAGTAAATTAATTTCAGGTATAAATACTTTATGCCAAATCTTAATAAGTGATCAGCTGTTTAATGAAGGTCAGTGAGCAGATAACTTACCTTCAGTCTGGAAGCATAAAAAAAAAAAAAAACCACTTACCTGTTACATAAATGACTGTAGAACAAAACATGAAATATATTACAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484255 lncRNA downstream 119563 4107263 ~ 4107557 (-) False G421655
TU484256 lncRNA downstream 119563 4107263 ~ 4107557 (-) True G421655
TU484084 lncRNA downstream 218841 4003039 ~ 4003732 (-) True G421497
TU484058 lncRNA downstream 438194 3788719 ~ 3788926 (-) True G421471
TU484052 lncRNA downstream 467375 3759418 ~ 3759745 (-) True G421465
TU484266 lncRNA upstream 7154 4236297 ~ 4237760 (-) True G421663
TU484337 lncRNA upstream 74013 4303156 ~ 4303880 (-) False G421719
TU484335 lncRNA upstream 74305 4303448 ~ 4303880 (-) False G421719
TU484339 lncRNA upstream 74305 4303448 ~ 4303809 (-) False G421719
TU484334 lncRNA upstream 74419 4303562 ~ 4303880 (-) False G421719
CI01000304_04161154_04166640.mRNA mRNA downstream 60480 4160216 ~ 4166640 (-) True CI01000304_04161154_04166640
CI01000304_04144667_04151439.mRNA mRNA downstream 73587 4144460 ~ 4153533 (-) True CI01000304_04144667_04151439
CI01000304_04012800_04017022.mRNA mRNA downstream 209843 4012800 ~ 4017277 (-) True CI01000304_04012800_04017022
CI01000304_04007023_04008270.mRNA mRNA downstream 218064 4006069 ~ 4009056 (-) False CI01000304_04007023_04008270
CI01000304_03997982_04001803.mRNA mRNA downstream 225317 3997982 ~ 4001803 (-) True CI01000304_03997982_04001803
CI01000304_04230808_04231542.mRNA mRNA upstream 672 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04253975_04256004.mRNA mRNA upstream 24268 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04263955_04264962.mRNA mRNA upstream 34703 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04269487_04273391.mRNA mRNA upstream 40059 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04370274_04377315.mRNA mRNA upstream 141131 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
TU481702 other downstream 1960879 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 1961780 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 1961935 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 1961935 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 1991014 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 34602 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 432673 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 442229 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2248308 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2248308 6477451 ~ 6479033 (-) False G422250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004939 True 873 mRNA 0.52 1 NC_007121.7 15047909 ~ 15048781 (-)
tiger barb (Puntius tetrazona) TU109951 True 2212 lncRNA 0.43 1 NC_056708.1 2191090 ~ 2193301 (-)