RNA id: TCONS_00004939


Basic Information

Item Value
RNA id TCONS_00004939
length 873
RNA type mRNA
GC content 0.52
exon number 1
gene id XLOC_002658
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15046837 ~ 15048781 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACACAGACAGCAGCTCAACCCTCAACCATGCGGACTCCGGGGATCCTGATATTCGGGATGGTCATGGCGCCCTGCGGCTGGGTCCTGGACCTGACCAGCACTGTTGCAACAAATTGGCGCACTGTCAACAACGTGCCAGGCTACTCTACAGATATGGTGGTGGGCCAGGGAATCTGGGACAGCTGCTTGACCTACTCATCAACTAGAACCCAAACATGCAACCAACAAGGCAACGACCAAATCTACTTCAAAAACCAAATCATTCCGATTGCTCAAGGAATGATGGTCGCATCCTTGATCGTAACTGCTCTCGGCTTGGTGGTGGCAACTCCTGGGGTTCGATGCTGGAGGGAAAAACCCAGATGGATACTGGCTGCGCTGGGTGGCCTACTTATTTTCTGTTCCGGTGTCCTGACCATCATTCCAATTGCGTGGTACACTCACATATTGACAAGCATCAATTCCACAATGGTCATAAGAAGCTCAACGACGACCCCTGACATCCGTGTAGGATACTGCATAATTTTGGGCTACATCGGAGGCATCATGGAGGTTCTCGGTGGTTTTGTGATGTTCATCGGGATTTGCTCCTGCTGCGGGGGACGGAATCGTGGAGAAAAGCCTCAACCCAAAACAACAGAAAGGCCTGTGCCCAGACCAACGGCTCAAACGAGGAGCTACAGACCAAGAAATGAGAGTCCAAGCAATTCCAGCAGCGTACCGTACTCGCAGAAGTCTCTGGACGATGACCTGGACTTCCCAAGAGCCAAaaccagagagagagacagaggtaGAGGAACAGACAGAGGGAGAGATTTGGCATCAGTCAACGCATCCTACACTGGAAGGCCGTATGATGCTGATCTCTAG

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-28 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN23 (claudin 23).

Ensembl:

ensembl_id ENSDART00000155674

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006013 lncRNA downstream 5161 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 12949 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00006012 lncRNA downstream 1745936 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 3149334 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3714796 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00004942 lncRNA upstream 33629 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 33629 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 34813 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004955 lncRNA upstream 574117 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00005752 lncRNA upstream 667958 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004934 mRNA downstream 104628 14894653 ~ 14943281 (-) False XLOC_002654
TCONS_00004936 mRNA downstream 109674 14936045 ~ 14938235 (-) False XLOC_002655
TCONS_00004932 mRNA downstream 118230 14873105 ~ 14929679 (-) False XLOC_002654
TCONS_00004929 mRNA downstream 118250 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004940 mRNA upstream 1688 15050469 ~ 15053614 (-) False XLOC_002659
TCONS_00004941 mRNA upstream 3917 15052698 ~ 15053507 (-) True XLOC_002659
TCONS_00004944 mRNA upstream 71930 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004945 mRNA upstream 272741 15321522 ~ 15340412 (-) False XLOC_002662
TCONS_00004946 mRNA upstream 272741 15321522 ~ 15340450 (-) False XLOC_002662
TCONS_00004937 other downstream 107563 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 315510 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 559755 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1116213 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1435661 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004948 other upstream 288529 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 569435 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 2028652 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 2055517 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 2097038 17145819 ~ 17156675 (-) True XLOC_002679

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04227914_04228723.mRNA True 2024 mRNA 0.43 1 CI01000304 4227120 ~ 4229143 (-)