RNA id: TU115293


Basic Information

Item Value
RNA id TU115293
length 3196
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122352611
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16189534 ~ 16193540 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAAAGAAGGCTGAATGCAGGCGCAGCCATTTTCTCCTACATTGGGACTCAATGGCCAAAATGGGTTTCCTTTGTTCCTAAAGGGATCTAAATCTTGATTTCATCAGCCTTTTATGGACTATTTAATACATACAATGTTTCTGTTTACAGGATCTGAGAAGAAGGAAGATGAAATGTTGGATGATATccctttgacatttttaaactttttttctcttcctggAAACCATCTTTGTCCCAGCAAACTAGGTCATGGCACACCCATATAACAGCATTTTATTCTTTAGTAAAATGCTactgaataaacattttgtatttgtttatattatttctaaCTAGActgtaaaaagagagagagagagaaagaaaaaaacacatgaaaattACCAACTGCTTTAAGGCCCTGCCTTGTTCAGGGCCAAGCATTAATCAATAACAAACAAGGCAGGCCATAGAGAAAAAGGACGATTGGCCTTTTGCAAAAATGCTGAATCACAGGTACGATTGATAGGGTTTGTGGTTGTTTTAATGCTCATCCTGGTTGCGcctcactttaaaaaaaaaaaaaaaaaaaaaaacctacagcaGTACTGGTaacaaagctattttttttagaagtaaaatgatgtttaaagaAATGTGGAATTCCCTTTCATGAAATTTCTATTGGGAACCGTGTATTCCTGGTTTTACTATGGAGTAgaaatcccttttttttttttttttttttttcaactggtATTTTCAGTAAGTGAACACTCACTGTATATCTGACCTTGCGCCAAGGGCACACTTTAATTTCATAACACTATTAGTTTCATAACAGCGTGCTTCATagatataatgtataaaaatacgCCTCTCTAAACATTCATAATTAATCAAAACACTAACAGAGATATTTACCTTAacattttgttgaaataatTCTATCAGGCCTAAACGATGAAGAAACAGGAACGTTTTCATTCCCATCTTCGGATCCTTTAACACTGGCTTTAAAGAGGGGGTTGGGTTGCAACGCCTAAAAGGAAGAAAACGACAATAACCATTTTTCTGCCGTCGTTTTTCGACATAATTCGCCATTTAACACACCTATCTGCGCAGTCTCCAACGAGTGGAGCTGCTGGAAATCTTGAGGCACTTTTAGATATTGCAATATGCAAACaatccctctctttctcttcctgaaGACAGAATGACAAGAGAAACTCACTCGCTCTTCATCATTCAGAAGACAGAAACAAATCTTTGCCGAGGTAATGGTTTATACGACCTTATTTGAGCAATATAACGTGGAAATATTCTGTCGTTTTTATAACGGGtaacattaaatgtatatttcaaacttattttaaacatacaagtatatattttgttatgtgggggtttattataaatgtaagaaaaaagagataaaggtgtaaaaatgattattatagaCACCTTTCATTGCTGACCCATGTCCAAAGCGACCTCAGAAATAGCCTGTTGTTTAATGGCTTCTCTGCTGTTCTCATTTTCAACATGGCGTCTTCACAAGGACATCTTTGTGGAAAAGAAAGGCTGCCGCCCGCGCCATTTATGGGCGAGGCTGTCGCTCGCTCTTTCAACCGATGCTGCCTTTTTTGTACGTGGCAATCATTGCAAACACAAAATGACAAGACGCGGTCAGAGGGGCTCGCCGTTTGAAAAGTGAGGATATTGCACAAAACTCGCAGTAATGCCTCGCGCGTGAAACGCGCCCTCGACGCCGCTGCGCAAAAGCTCTGGAAACCCTGTGGCACTGAAACATACACACAGCAGTAATCTGAGAGTTTGGACGCATGCCACGGGTCCGGGATGTGACTGCACCCACCGAACCATTTAAGGTCGGAGAAAGACTCTCAAACACTGTGTGGCATTTCAATCAGCAAGTACAAAGGGAATATCCAGTCCTCTGtgctctctctcgtcccccttTCAAGAACATTCGGTGCAGTTTATTCGCCAGCCATTGAGAGGATAATTTGACGTGATGCATGCAGGATTGCGCACTACTTAGGTTTCTCAGGTCTTCTGCTGAATATGTCATACAGTTGCAACACATACCGGTATGTGGTATGCAGATTGTCGTGTTTTGCACAATTTATGgctatgtaattttttttttagttatttctaGTTTAATCCACATCTCTATAAACGTGTAGAGAACGGACATATTTATATAACCCAGGCAGCATCTCAACATTGGAATTTGGTCGtcgtcttttgtgtttttttttttttttttttttctcctcctttctctctttccctttcttTACGTGCGTTTGGGGCGACGCGCCAGTTCCAATTTATCAACCAGAACGGTATTGCGCAAGGGAACGCGCCATCTGTCTTtcgcttctttttctttttctttttttttttttttttaggattcacGCTTGTTATTGCATGCACACCAATACAAGTTTGTCTCTCTGCCATAGTCTAAAGTAGGACTGATGTCCGAAtatttcagggaaaaaaaaggacTGAAGACGTGCTGACCACATCGTTTCCTGTCGCCCAAGGCTGAAGTGGGTCATGAGGCCATTTTATGGCACTCGTGTGTTTAATTAGGAAAATCCTCTTTATCTTCGTAACCTGCGAACGCAAGCTGTTTCTAACGGCAGGATAGAAGGGCAGAAAAAAGATCTCAGTCGACACCTTcttttatgtacatatttatttttctatttaattttttttggtttgttacCTGATACATGCAGACGTGCGCGTAAAGCTTCGTTGGTGCTCTGGACAGCTGGAGTGGATCCTCGACAAATTTCGACGTTCATCTACGCAATTAATCATATGTGCTGTTAACTGTTTTTTGTAGGTCTTGAAAGGACGTTTTTGACGCACTCTTTTATATGTactattttgcatattttatatttttgtggaggATGGCTAGCAATGTGTGTAGATCGCctgtaatgtgcatttttaatgccaGTCTAATTTTCCACAAGAAAACTGAGGAAATACTCAACTGATCCTGACGACGGTTCGCGTCTGCCTTTCTCATCATGTGCAATTATTTTAGTTGCGTTCACTTTAAACCTTTTTCTTTCTCGTTGAAGTTCATTGTAACGTTTAACAATATGGTAAGTATGCATACAAAGACGTTGCGCTAAATTAGCTGCTTTTGTGCtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115297 lncRNA downstream 9665 16178600 ~ 16179895 (-) True G77936
TU115278 lncRNA downstream 14753 16172478 ~ 16174807 (-) True morn3
XR_006251962.1 lncRNA downstream 88216 16098995 ~ 16101344 (-) True LOC122353141
TU115092 lncRNA downstream 202073 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 257909 15931346 ~ 15931651 (-) True G77821
TU115318 lncRNA upstream 52664 16245655 ~ 16252193 (-) True G77947
XR_006251885.1 lncRNA upstream 53662 16246653 ~ 16249749 (-) True LOC122352562
TU115371 lncRNA upstream 158406 16351397 ~ 16353048 (-) True G77979
TU115372 lncRNA upstream 181229 16374220 ~ 16379551 (-) True G77980
TU115407 lncRNA upstream 201223 16394214 ~ 16395645 (-) True G78010
XM_043250444.1 mRNA downstream 1600 16183854 ~ 16187960 (-) True rhof
XM_043249902.1 mRNA downstream 12449 16173751 ~ 16177111 (-) False morn3
XM_043249898.1 mRNA downstream 19746 16146436 ~ 16169814 (-) True LOC122352490
XM_043249899.1 mRNA downstream 23979 16146436 ~ 16165581 (-) False LOC122352490
XM_043250855.1 mRNA downstream 94204 16081970 ~ 16095356 (-) True ggt1b
XM_043251192.1 mRNA upstream 16757 16209748 ~ 16213685 (-) True car15
XM_043250866.1 mRNA upstream 24035 16217026 ~ 16227175 (-) True dgcr2
XM_043250243.1 mRNA upstream 34328 16227319 ~ 16232580 (-) True ess2
XM_043250244.1 mRNA upstream 39755 16232746 ~ 16239069 (-) True stambpa
XM_043250245.1 mRNA upstream 47185 16240176 ~ 16244033 (-) True dusp11
unassigned_transcript_1474 other downstream 70538 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 70704 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 132253 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 171790 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 292462 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005782 True 2823 lncRNA 0.39 4 NC_007121.7 41983136 ~ 41986363 (-)
grasscarp (Ctenopharyngodon idella) TU414886 True 3404 lncRNA 0.37 1 CI01000158 660156 ~ 663559 (-)