RNA id: TU14674


Basic Information

Item Value
RNA id TU14674
length 663
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G9834
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6522805 ~ 6523467 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGTATAGACAATAACAGGGAGTGAACTAGAACCCACGTATACCTCAAAATTTTGGAGTGCCATAAGTAATGCAAGAGCCTCCTTTTCAATAGTAGAATAATTAAATTGATGCTTGTCAAATTTAcgagaaaaataacaaatcgGGTGGTCAATTCCATCTGGATCTTCTTGCAATAGGACTGCACCAGCCCCCACAGCGCTAGCATCAACCTCCAACTTAAATGGACGCTCAAAATTTGGGGTTGCGAGTACTGGAGCGCTGCACAGGAGTGCCTTCACACTATCAAATGCATGTTGACACTCCAACGACCACTTAAACTGTTGTGAGGGGCTTAACAAACTGGTGAGAGGACTTGCAACACTCAAAGTTTTTACAAAATCCACGATAGTATCCAGCCATCCCTAGGAACCGCCTCAGTTGACGTCGTGTAGTAGGAACAGGAAAGTTTGAAATGGCTGATACTTTAGCAGCAACTGGTCGAACTTGTCCTTGCCCAACCTGTTTCCCAAGATATGTAATGGTAGCCTGGGCAAATTCACATTTTGATAGATTTAATGTTAAATTGGCCTTTGACAGGCGTTCAAACACAGAATATAACTGAGACATATGTTCTGGCCAGTTAGTTGAAGAAATCACCAAATCATCCAAATATGCATTAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14667 lncRNA upstream 10411 6512164 ~ 6512394 (+) True G9827
TU14665 lncRNA upstream 20211 6502390 ~ 6502594 (+) True G9825
TU14570 lncRNA upstream 146208 6376143 ~ 6376597 (+) True G9758
TU14477 lncRNA upstream 379940 6142042 ~ 6142865 (+) True G9697
TU14472 lncRNA upstream 662853 5852269 ~ 5859952 (+) True G9692
TU14676 lncRNA downstream 653 6524120 ~ 6524421 (+) True G9836
TU14677 lncRNA downstream 1315 6524782 ~ 6525095 (+) True G9837
TU14678 lncRNA downstream 2487 6525954 ~ 6526170 (+) True G9838
TU14679 lncRNA downstream 3624 6527091 ~ 6527303 (+) True G9839
TU14680 lncRNA downstream 3902 6527369 ~ 6527632 (+) True G9840
XM_043218864.1 mRNA upstream 34105 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 34105 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 34105 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 154851 6367192 ~ 6367954 (+) False sst2
XM_043217056.1 mRNA upstream 185233 6285922 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 317159 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 332777 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 332784 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 332787 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 332796 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 154851 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 300286 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 302305 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 409098 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 413158 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 166905 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 168201 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 462831 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 982124 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1583398 8106865 ~ 8107777 (+) True G10212

Expression Profile