RNA id: TU14808


Basic Information

Item Value
RNA id TU14808
length 270
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G9940
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7050725 ~ 7050994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggcatctacgctaatattagtcctgtctctttctcaatctgttttcacagtttgtatccagactagatggtcgatcagcacccagagattatgttcatcagagaccagaacacctagatgcgccccgtggaccgatcaccagatcctgatgcacacacacacgcacacgcacacactaagtcatttacactacctgacacagctgcgtttaaaattgaactggaagttaagtgctgggcgtccagtcagaggagaactgaccccaactg

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247410.1 lncRNA upstream 7637 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 14227 7036121 ~ 7036498 (+) False LOC122324999
XR_006247246.1 lncRNA upstream 14265 7036056 ~ 7036460 (+) True LOC122324999
TU14792 lncRNA upstream 40131 7009360 ~ 7010594 (+) True G9930
TU14790 lncRNA upstream 49246 7001060 ~ 7001479 (+) True G9928
TU14819 lncRNA downstream 48634 7099628 ~ 7100661 (+) False lrrc53
TU14902 lncRNA downstream 138661 7189655 ~ 7196400 (+) True G10012
TU14903 lncRNA downstream 146096 7197090 ~ 7199537 (+) True G10013
TU14910 lncRNA downstream 155513 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 159744 7210738 ~ 7210938 (+) True G10021
XM_043256234.1 mRNA upstream 77554 6970493 ~ 6973171 (+) False penka
XM_043256227.1 mRNA upstream 77554 6970494 ~ 6973171 (+) True penka
XM_043260288.1 mRNA upstream 171076 6856254 ~ 6879649 (+) False bpnt2
XM_043258773.1 mRNA downstream 33140 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA downstream 33140 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA downstream 33235 7084229 ~ 7098176 (+) False cryz
XM_043258735.1 mRNA downstream 47309 7098303 ~ 7105792 (+) True lrrc53
XM_043258743.1 mRNA downstream 49188 7100182 ~ 7105792 (+) False lrrc53
TU14783 other upstream 63606 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 358350 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 359946 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 682771 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 828206 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 454597 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1055871 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2111617 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2695600 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2860634 9911628 ~ 9916861 (+) True znf414

Expression Profile