RNA id: TU58322


Basic Information

Item Value
RNA id TU58322
length 247
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G51197
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1880111 ~ 1880357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAATTGTTCTCAAAAGTTTGTAGAGTGACATCAAATGTACGTATAAGGTCCTATAAACATTATCAATGCTTCTGGAATATGATAGAGTATTAAAATAAAGGCAAATACGTTGTCCATGACTGACAGAGCGTCCATTAAAGAAATGTGTCGTGTCAGCATGGGAAAACTGCTATGATCTACTACGCTGCAGTGTCAACGTCTAGGAAAGAAGGTGTCAACATCAACTTAGGACTCCCACCCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58321 lncRNA upstream 1263 1878637 ~ 1878848 (+) True G51196
TU58320 lncRNA upstream 3903 1875982 ~ 1876208 (+) True G51195
TU58319 lncRNA upstream 10256 1869642 ~ 1869855 (+) True G51194
TU58318 lncRNA upstream 14310 1865444 ~ 1865801 (+) True G51193
TU58312 lncRNA upstream 25600 1849827 ~ 1854511 (+) True G51188
TU58323 lncRNA downstream 354 1880711 ~ 1880910 (+) True G51198
TU58307 lncRNA downstream 577 1880934 ~ 1925719 (+) True G51183
TU58344 lncRNA downstream 72784 1953141 ~ 1953363 (+) True G51216
TU58297 lncRNA downstream 78903 1959260 ~ 1960717 (+) True G51175
TU58359 lncRNA downstream 143752 2024109 ~ 2024459 (+) True G51228
CI01000009_01733394_01738937.mRNA mRNA upstream 140643 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01692563_01725364.mRNA mRNA upstream 154747 1692563 ~ 1725364 (+) True CI01000009_01692563_01725364
CI01000009_01570544_01595199.mRNA mRNA upstream 284645 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01454610_01484907.mRNA mRNA upstream 394283 1454224 ~ 1485828 (+) False CI01000009_01454610_01484907
CI01000009_01431700_01434463.mRNA mRNA upstream 445569 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01892219_01893628.mRNA mRNA downstream 11862 1892219 ~ 1893754 (+) True CI01000009_01892219_01893628
CI01000009_01897343_01919208.mRNA mRNA downstream 16986 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
CI01000009_01966898_01976924.mRNA mRNA downstream 86541 1966898 ~ 1977734 (+) True CI01000009_01966898_01976924
CI01000009_01990700_01991267.mRNA mRNA downstream 110343 1990700 ~ 1991387 (+) True CI01000009_01990700_01991267
CI01000009_01993176_01999494.mRNA mRNA downstream 112819 1993176 ~ 1999873 (+) True CI01000009_01993176_01999494
TU58233 other upstream 198145 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 441756 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1109878 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1784324 94202 ~ 94283 (+) True G50472
TU58306 other downstream 13878 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 374742 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1181676 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1322415 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 1322415 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060

Expression Profile