RNA id: TU93063


Basic Information

Item Value
RNA id TU93063
length 360
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G81780
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6387839 ~ 6388687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCCACAGAGAGGTTTTGGAGCAAAGGCAGCCAATAAGATTCCAGATCATGAATAGAAGATATAAGATTGTCATCCAGGTAAAGGTCCCTCAAAAGAACGTGGTTCTGCAGGACAGGCAGCTATGCCATTGTCAGACTGTTTCCCCTGAGGTCCAATGTGTTAAGGAGTGCGCAATTCTCCAAACCCTCAATGTGGCTTAGGTGGTTGTACGAACAGTCCAGATGCAGAAGGGTATAAATTTCCTTCAAACCTCTCATGCTGAGCAGCTGGTTATGGTCCACTGATAATCGCAGAAGCATTTTCAGGGGTCCTAAACCACCTAAGAAAGCAAAGATATATCATTCAGTCAGTGCTGGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93037 lncRNA upstream 35720 6351905 ~ 6352119 (+) True G81754
TU93021 lncRNA upstream 56195 6331040 ~ 6331644 (+) True G81738
TU92942 lncRNA upstream 302944 6083474 ~ 6084895 (+) True G81672
TU92935 lncRNA upstream 305795 6079666 ~ 6082044 (+) False G81666
TU92943 lncRNA upstream 327961 6059792 ~ 6059878 (+) True CI01000013_06050285_06059640
TU93048 lncRNA downstream 59876 6448563 ~ 6449178 (+) True G81765
TU93072 lncRNA downstream 62772 6451459 ~ 6451669 (+) True G81789
TU93073 lncRNA downstream 63038 6451725 ~ 6451932 (+) True G81790
TU93127 lncRNA downstream 226831 6615518 ~ 6644918 (+) True G81843
TU93150 lncRNA downstream 265253 6653940 ~ 6654270 (+) True G81864
CI01000013_06311729_06313001.mRNA mRNA upstream 73715 6311729 ~ 6314124 (+) True CI01000013_06311729_06313001
CI01000013_06278898_06283356.mRNA mRNA upstream 102685 6278898 ~ 6285154 (+) True CI01000013_06278898_06283356
CI01000013_06209318_06233289.mRNA mRNA upstream 154456 6209096 ~ 6233383 (+) True CI01000013_06209318_06233289
CI01000013_06132773_06163282.mRNA mRNA upstream 224202 6132565 ~ 6163637 (+) True CI01000013_06132773_06163282
CI01000013_06076169_06080164.mRNA mRNA upstream 307478 6075400 ~ 6080361 (+) False CI01000013_06076169_06080164
CI01000013_06405275_06423872.mRNA mRNA downstream 15509 6404196 ~ 6424521 (+) True CI01000013_06405275_06423872
CI01000013_06440333_06446814.mRNA mRNA downstream 50939 6439626 ~ 6447195 (+) True CI01000013_06440333_06446814
CI01000013_06548714_06565582.mRNA mRNA downstream 159282 6547969 ~ 6566123 (+) True CI01000013_06548714_06565582
CI01000013_06635640_06638681.mRNA mRNA downstream 246663 6635350 ~ 6639000 (+) True CI01000013_06635640_06638681
CI01000013_06705612_06716925.mRNA mRNA downstream 316925 6705612 ~ 6717106 (+) True CI01000013_06705612_06716925
TU92936 other upstream 305472 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 328343 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 1551607 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 2322010 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 2803055 3584008 ~ 3584784 (+) True G80062
TU93312 other downstream 947258 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 1639651 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 2940642 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 3212924 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 3212924 9601611 ~ 9602184 (+) False G84005

Expression Profile