RNA id: CI01000022_00642577_00653051.mRNA


Basic Information

Item Value
RNA id CI01000022_00642577_00653051.mRNA
length 1869
RNA type mRNA
GC content 0.47
exon number 12
gene id CI01000022_00642577_00653051
representative True

Chromosome Information

Item Value
chromosome id CI01000022
NCBI id null
chromosome length 707061
location 642052 ~ 653051 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTTATTTATTTGTTCTATTTTGGTGGTCATTGTGGCGGCATCATTTGGGGTTGCCATGGAGACAGTGATACAGTCACAGCACATCTGATCTGCTGTATTACACTGCGGAGAGACACCGACCCGCCGCTCCACCGGACCGATGACGGACAACGAGCGCGCGGCCCGAACCCTCAAACACGTCCTGCAGAAGCCGGGGAACGGCAGCTGCGCGGACTGCGGCGCGGACAATCCAGAATGGGGCTCTTGTTCTTTGGGAGTCTTCATCTGCCTGGCCTGCTCTGGAGTACATCGCAATATTCCCAGTATCGGAAAAGTCAAATCCCTCCGACTCTCACGCTGGGAGGATTCAGAAGTTCAGGTGTTGATGATGTTTCTGTAAACCTGCTGCTTTCAGTTCAGAGAATAACCACATTCCTGTCTGAGCATGGGAATGACACCATGAAGACCGTTTATGAGGCTGCTGTTCCTGTTTACTACTACAAGCCAACGCACAAGGACTGCCAGGTTCTGAAGGAGCAGTGGATCCGGGCGAAGTACGAGAGGCAGGAGTTCACCGAGGACGGCAAGAAGCCGATCTATGAGGACGAGGCGAAAGATGGCATGCTGATGAAGAGGGGGCGGGACAACGGACAGTTTCTCAACAGGCGATTCATCCTGTCCTTGAGGGACGGCACACTAAAGTACTACACTAAACTAGACGCTAAAGAACCCAAGGCCGTTATGAAGGTGGACACACTCAACGCCTGCTTCCAGCCGGACAAGATCGGAAACCCCAACGGTCTGCAGATCACCTACGTGAAAGACAACATCACACGAAACATCTTCGTCTACCACGACAGCAGCAAGGAGATCGTGGACTGGTTTAACTCCATCCGAGCCGCTCAGCTGCACTATCTGAAGGTGGCTTTCCCTGGAGCGACGGATGCTGAGCTGAAGCCCAAACTGACACGCAACTTTCTGAAAGAGGGATACATGGAGAAAACGGGCCCGCGGCAAACAGAAGGCTTTAAGAAGCGCTGGTTCACGCTGGACCACCGACGGCTCATGTACTTCAAAGATCCTCTGGACGCGTTCGCTAAAGGCGAGGTGTTTCTGGGACACAGGGATCACGGGTACCGCGTTACGATCGGACTGCCCGCGGGAACCCACTATAACGGGACGTGGCAGTACGGCATCACCATAGAAACCCCGGAGCGCAGCTTCCTGTTCACCTGTGAAACGGATACGGATCAAAAGGAATGGATGAACCATTTCAATGTAGTCCTCAACACTCCCATGAGCCCGCAGGAGTACACAGATCATAAAACCTTCCCTACGTTCAGACTATTTTGTCTACTATAACTTTATATTTGCATATTCATCTAAACTAAAATTTTGTTTTGAACCAAATTAGTCTTTTTGTGGCCTAAAGGCTCCATCTAGTGGTGAGATTGAGTTATTATTCATCATCTGACCATTCACATGGACATTTGTTAAAGTGAACTTATTTTTTTAAATGTAAAAGGTTCTCTGGTTCTGAACATCCCTTTCTATATATATTAAAGGAATGGTTCAGAAAAAATGATCATTCTGTCATCATTTTTTCACCCTCATGTCCTTTTTTTTCCTCTACAGAACACAGAAAGAGATGTTTAGCAGAATGTTCACACTGCATTTTTACATTCAATAACAGTTTGTCACGACCACATCAGTCCTCAAAAACAGCCAAAAGGCCTCATAAGTGTCATAAATTATCCATCATAAGTGCCGTGCAAAAGTGTTCACCCCCTGACCTTATGATATCAATATACACTCAATACCCCATAATAACTAATCAAAAAACAGATTTGTTACAACTTTGCAACTTTATTAAAAAGCAAAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136848 lncRNA downstream 2893 638535 ~ 639159 (-) True G120528
TU136838 lncRNA downstream 4747 635648 ~ 637305 (-) True G120521
TU136874 lncRNA downstream 8307 633511 ~ 633745 (-) True G120554
TU136873 lncRNA downstream 8967 632604 ~ 633085 (-) True G120553
TU136686 lncRNA downstream 290680 338448 ~ 338461 (-) True G120377
CI01000022_00639833_00640843.mRNA mRNA downstream 1209 639332 ~ 640843 (-) True CI01000022_00639833_00640843
CI01000022_00625879_00628864.mRNA mRNA downstream 13188 625727 ~ 628864 (-) True CI01000022_00625879_00628864
CI01000022_00351677_00360411.mRNA mRNA downstream 281112 350923 ~ 360940 (-) False CI01000022_00351677_00360411
CI01000022_00339260_00347753.mRNA mRNA downstream 292851 339176 ~ 349201 (-) True CI01000022_00339260_00347753
CI01000022_00013891_00023604.mRNA mRNA downstream 618448 13660 ~ 23604 (-) True CI01000022_00013891_00023604
CI01000022_00668020_00694434.mRNA mRNA upstream 14969 668020 ~ 694434 (-) True CI01000022_00668020_00694434
CI01000022_00701444_00706188.mRNA mRNA upstream 48384 701435 ~ 706188 (-) True CI01000022_00701444_00706188

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062211 False 2621 mRNA 0.46 11 NC_007117.7 584632 ~ 598165 (+)
bowfin (Amia calva) AMCG00014895 True 2879 mRNA 0.47 10 CM030128.1 38676409 ~ 38688061 (-)