RNA id: AMCG00014895


Basic Information

Item Value
RNA id AMCG00014895
length 2879
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00014895
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38676409 ~ 38688061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagaggaaggggggagggAAGCAGAAAGTGGGaaaagagggagatggagaaaaAGTCAAGGAAGAAGCGAGAGGGAGAAAAACATGtaggCCTGTATGAAACTGTAAACAAACTAACTTACCGCCTGTTGCTCCACTTCAGCAAAGAGATTGTGGTGTTCATGGCAGAGAAGGGGAACCAGGTAGTGAAAAGGCAGTATGAGGCTGCAGTTCCCGTGTACTACTACAAGCCCTCCCATCTGGACTGCCAGGTCCTAAAAGAGCAGTGGATCAGAGCCAAATACGAGAGAGAGGAGTTCACAGAGCCAGGGAAGAAGCTGCCATATGAGGAAGCGGTCAGGGAGGGCATGCTGATGAAGAGGGGCAGGGACAACGGCCAGTTCCTAAGCCGGAAGTTCATGCTGTCAGAGCGGGAAGGCACGCTGAAGTACTACACCAAGTACGACGAGATCGTAGACTGGTTCAACGCCATCCGAGCTGTGCAGTTCCACTACCTGAAGGTGGCCTTCCCGGGAGCTACTGATGCTGAACTGAAACCCAAACTGACAAGGAACTTCCTGAAGGAGGGCTACATGGAGAAGACTGGTCCCCGGCAAACCGAAGGCTTCAAGAAACGCTGGTTCACGCTGGACCACCGACGGCTCATGTACTTCAAGGATCCCCTGGATGCGTTTGCCAAAGGGGAGGTGTTCCTGGGGCACCGGGATCTGGGTTACAGCGCCAGCGCCGGCCTGCCCCCCGGTACCCATGGCAATGGCGGCTGGCAGCACGGCATCACCATTGTGACCCCAGAACGCAGCTTCCTGTTCCGCTgcgagacagagacagactgtcaGGACTGGGTGCAGCACTTCAACACCGTCATCAACACCACCATGACACCCCAGGAGTTTGCCATGGAAGCCCTCTTCAAACACAAGTAATCAATCTCCATGGAGACGGCAGTGGTCACCAAGGTCACCACACACAGATCCAATCCTGTCCTATCCACTCACTTTTTGTTACACCCTTTTGACGCCCTCCCCCCAAGcaacgcaacacaacacaacacaacacaaccagaAACCTATGATATGAACCAGTAGGGCAGAAATGGTTGAATGAAAAGAGTGCAATCcgagtgtgagtgtgcatgcGTGTTAGAAATGGGCTGtactggaaaaatatatataaaaaaatgttgctaaagttaaagaaaaacaccatATACAAACTGTTAGTTCCCATCCCAAATCCAAGCCCACAGCTTTTTGTGTCCTGCCTGCTTGGCATGAGGTTGTAgttttgttgtgtattgtttttttgttgaggcaaaaatgaaaagaaaactccAGATACTAATCTCCCTTGTAGCATATTAATATTCCACGTTTATGCTCATCGGAAGATTGCAGTCTGACGCAGAGCAGTAACCTTTCAGTTGCAGTGTGTGATGTCATTTTGGGAGTGGGCATCCCCCTATTCCACGCGCCCACTCCCATTCCGTCAACTGGAAACATCTGTCTGCCGACACACAGCATCATTGTTACGcatcccccctcctccccaggCAGGGTAGTGTCACAGTGGAGTCCTGTTGGGACTCAACAGGCCTTCACTGGGCTTTACTACACAGGGTCCTGAGTGCAGTAAACCACGCTCTACCAGAGTCAACAGGCCTTTTGGCCACTGAGCATGGTAAAGGGGGTGTTCCGTGAAGGTTTGTTGAGCTCCCATAGGCCTGCAATGTTACACTATGGGAAGCCCCAGTCCAGCCATGGTAACAGTGTCAACAGTGTCCTATCATGAATATAACAGGGTGAACCAGcataagtgtatatatatataacacattaaaTTCTCTATATTTTTTGGCTCTGGAATGCAGTTGAAACTTCATAATCTTGAACTCGAACATAAACACTGTcccttaataaaaacaaactatgatGAGCCCATCAGGATAAAAAAGTTCAAGAAACTCGCATGAAACCGGGGCCTGTGTCATTGGATTTCAGTGTTTATAACGGTCTCTGTCCTGTGTCTGCAGAATGGTCTTTTCCCTTCATACACACTCAATAGAACACTACTGTCAATCCGCAGAGGACCACAAATCTCGGCCAACATTCAAATTTCCTGCAGATCTGTGCGATGCTGACAAACAGGTGTGACAGTTTAGCGTGGAATTTAACTTGGGTGCTTGTGACTTGATGAGCTTGCTAACTGAGAGCCAACATTGGCCTACCAGTAGCATTTTCTTTAAGATCTTTGCACCCAGCTCAGTCCATGTTATTCCCAGAAATATTGCAATATAGTTGttttttaccattattatttgtattgttattaatctATTAGTTTGTTTAGCAGTGATTTGTTATATTATCTTAGTCTCTTGACTGTCCCTTGCCACTGTGAGAGAGTAcatatagaaagagagaaaggtcaagtgagacagagagagaggggggagacaaagagagagatggagatagtgagggagatggagagaggactgagggagacagaaagacaaaaatatagATACTAACAAACTACTAGAGAGACAGGGAGATGGGGAGGCTAAAATAGAAGAGAGTGAGGCAGAGGGAGACAGATGGGGAAGAAGAGACATAGGGGGGGAAGGATAGAGGAAGGGGGGGGTGATTGTTCTTGATGGTTTAAAAGTTTAACACAGCCTGTTTAAAACCTGTACTCTGGCTATAACACTGCCAGGGGAGCGCAGTGAAGATATTATAATGACTGACTCTGCTCAGGGGACACTCACACCAGCACAGGAAGAGTTGTATACAGTCAGGGTGGGAGTTTCATGTGTGGAAGTCTACAGTGTCTACTGAGTGGTTCTTGataataaaatctatatataaacacatgtaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92615 lncRNA downstream 13954 38662138 ~ 38662455 (-) True G74174
TU92608 lncRNA downstream 27119 38648922 ~ 38649290 (-) True G74167
TU92594 lncRNA downstream 31871 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA downstream 31871 38640676 ~ 38644538 (-) True G74160
TU92567 lncRNA downstream 100441 38506192 ~ 38575968 (-) True G74137
TU92657 lncRNA upstream 34543 38722604 ~ 38750977 (-) False G74206
TU92655 lncRNA upstream 44657 38732718 ~ 38750977 (-) True G74206
TU92672 lncRNA upstream 87643 38775704 ~ 38776755 (-) True G74221
TU92674 lncRNA upstream 99900 38787961 ~ 38788273 (-) True G74223
TU92675 lncRNA upstream 114855 38802916 ~ 38803885 (-) True G74224
AMCG00014894 mRNA downstream 47209 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014891 mRNA downstream 183455 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014889 mRNA downstream 252568 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014888 mRNA downstream 273615 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014886 mRNA downstream 337046 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014897 mRNA upstream 40928 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014902 mRNA upstream 450762 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014901 mRNA upstream 516986 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014903 mRNA upstream 575080 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 594093 39282154 ~ 39285347 (-) True AMCG00014905
TU92596 other downstream 31871 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 185469 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 243534 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 263178 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 326118 38343322 ~ 38350291 (-) False G74087
TU92703 other upstream 210034 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 570001 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 949838 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 1213409 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 1246832 39934893 ~ 40012081 (-) True G74593

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000022_00642577_00653051.mRNA True 1869 mRNA 0.47 12 CI01000022 642052 ~ 653051 (-)