RNA id: CI01000037_04505291_04507162.mRNA


Basic Information

Item Value
RNA id CI01000037_04505291_04507162.mRNA
length 1182
RNA type mRNA
GC content 0.35
exon number 4
gene id CI01000037_04505291_04507162
representative False

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 4504710 ~ 4507166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATAAAAGCTGCAGAGCTTTTTGAGGTAAAAAGCAGAGCAAAACTCAGTTTCAAGAGTAATATACAGCAGTACAAGCCATAGCAGAAATATAACAGAGAAAAGAAGAATATAATTTTTTAGTAAAAAATAAAAAAATCTTAGTATTTTTAGTTTTTTTTTTTTTTTTTTTTACTTAGTATTCTAAGTAAATAAAGAAGAACATGAACAAATGGGAGCTGTTTAATAAGACAAGTGAACACGGTAGACAGTGACAGGATGTGACAGTTCTGCTGTGGAAAATGTGCTCTGTGGTTTCACTGGTCACTGCAGACAAGAGCACAAAACTAATCAGATTATATTATATACCTTCCATTACCATCCATTATATAAGTAATGTATATTGATTACTGATTATTTTTAATGTCCAAAAATCTGCTACTATACAAAATGTTAAGTATATTCTCATCAGCTGTCTTACAGGCATTTCCGTCTGTCTTCACTTCTTCCTTACTAGTTCAGTCTCTACAGCACTTACAAGCCTTCAAGATACTGAGCGGACAGTAAGACAGTTTATACTCCTTCAAAACTGAGTGTCTTGTTATGGCAAATTTTCAAATCAGGATTCTTCATCTGGATCTCTGTGTCGTCATTATTCTCCTGACTTACACAGATTATTCCAAATCAAATCAAGAGCAAAGGATTCGGCAGCACATCAACAAAACAGTGTTTGTGGGGGAAACAGTTTCACTTCACTGCAACAAAACCCAATTTGATTACGATTTTGCATGGAAAATGAACAACTCTGTTATTTTTAGGCAGGTCTCTGATATTAACATAACTAACATAAACTTCAGCTCAAACAGGATTCACATCAACCCAGCAGTTCCAAGAGAATTAAAAATACATCAGATACAAGCGTCTGATGCAGGAAACTACACCTGTTATCCAGCAGAAATAAGATGGACATTAACAATAACAGAAAACAGACCAGCCTCACCCAAACAAATGTCGCTTTACATCATCATCATCATCATCTCATGTTCTGGAGTCATTATGGTCTTTCTGATGATCATCATCAGTATCTGCATTCACAGGAAAATGAGGCAGAAGATCAGCTCTGGTTCAGATATGAAAGATGTAAGTACATTTACCACACCTCAGGTTATTATTGGGCTTCTATATCTGTTCCTGGTTTGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200865 lncRNA upstream 11709 4492630 ~ 4493001 (+) True G176836
TU200861 lncRNA upstream 20719 4482137 ~ 4483991 (+) True G176832
TU200840 lncRNA upstream 83550 4420873 ~ 4421160 (+) True G176816
TU200839 lncRNA upstream 84217 4420288 ~ 4420493 (+) True G176815
TU200825 lncRNA upstream 124067 4379616 ~ 4380643 (+) True G176804
TU200894 lncRNA downstream 15132 4522298 ~ 4530764 (+) True G176858
TU200914 lncRNA downstream 52594 4559760 ~ 4561057 (+) True G176871
TU200925 lncRNA downstream 82663 4589829 ~ 4590527 (+) False G176881
TU200926 lncRNA downstream 82663 4589829 ~ 4590527 (+) False G176881
TU200927 lncRNA downstream 82663 4589829 ~ 4590480 (+) False G176881
CI01000037_04295697_04296550.mRNA mRNA upstream 207672 4295697 ~ 4297038 (+) True CI01000037_04295697_04296550
CI01000037_04240865_04265240.mRNA mRNA upstream 239303 4240623 ~ 4265407 (+) False CI01000037_04240865_04265240
CI01000037_04213179_04218057.mRNA mRNA upstream 286405 4212907 ~ 4218305 (+) False CI01000037_04213179_04218057
CI01000037_04175833_04178651.mRNA mRNA upstream 326059 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
CI01000037_04168194_04170478.mRNA mRNA upstream 333573 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04566454_04567634.mRNA mRNA downstream 59288 4566454 ~ 4568152 (+) True CI01000037_04566454_04567634
CI01000037_04582339_04583876.mRNA mRNA downstream 75173 4582339 ~ 4583876 (+) True CI01000037_04582339_04583876
CI01000037_04591117_04597363.mRNA mRNA downstream 83588 4590754 ~ 4597460 (+) False CI01000037_04591117_04597363
CI01000037_04604243_04607315.mRNA mRNA downstream 96623 4603789 ~ 4607315 (+) True CI01000037_04604243_04607315
TU200774 other upstream 286563 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057
TU200353 other upstream 1416742 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1664657 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2534319 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2827303 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072795 True 759 mRNA 0.38 6 NC_007120.7 9858935 ~ 9866531 (+)