RNA id: TCONS_00072795


Basic Information

Item Value
RNA id TCONS_00072795
length 759
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_036975
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9858935 ~ 9866531 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCACAGGGTTAAACTGAGTTTGCTGTTATGGCCAAATTTCAAACCTGGATTTTTCATCTGGACCTCAGTGTCGTCATTATTCTCCTGATTCATGCAGCTTGTTCAAAATCCAACCAAGAGTCAAAGATTTATCAGCACATCAGCAAAACAGTGTTTGTGGGGGAAACAGTTACACTTCACTGCAACAAAACCACATTTGATAATGAATTTTCATGGAAAATGAACAACTCACATGTTTTTAGCCATTCTGCTGAGATTAACAGAACTCACACAAACTTCAGCTCAAACAGGATTCACATCAACCCAGCAGCTCCAAGAGAATTAACAATACAGCAAATACAAGTGTCTGATGCAGGAAACTACACCTGTTATCCAGCAGGCATAAGATGGACATTAACCATAACAGGAAACACACCATCATCACCTGAACAAATATCGTTCAGCATCATCATCTTCGCCATTATCATCATCTCATGTTTTGGAGTCATTCTGATCTGTCTGATCAGCATCTGCTGGAAGCAGAAGAGGCAGAAGATAAAATCTCGTTCAGGTGAAAAGGATAATATGATGAAGATCTCTGACTGTGACAAAAACTCAACAACAGTCTGTgtcTACAGCCTTCACACAGTTTCATAAACTTGAACTTTTCTTCTCAACTCAGTTTATGTCcgcaattgtattttttttcattgttgtgGAAAATAGAGACTCGTGTCTGTTTGCTTctaaaatttgaataaatacatCTACTAATCTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000137206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075069 lncRNA upstream 893805 8930004 ~ 8965130 (+) False XLOC_036967
TCONS_00072777 lncRNA upstream 893805 8942258 ~ 8965130 (+) False XLOC_036967
TCONS_00072779 lncRNA upstream 893805 8953793 ~ 8965130 (+) True XLOC_036967
TCONS_00072776 lncRNA upstream 916409 8930004 ~ 8942526 (+) False XLOC_036967
TCONS_00075068 lncRNA upstream 973114 8884235 ~ 8885821 (+) True XLOC_036965
TCONS_00075070 lncRNA downstream 26575 9893106 ~ 9896957 (+) True XLOC_036976
TCONS_00072798 lncRNA downstream 67779 9934310 ~ 9935066 (+) True XLOC_036977
TCONS_00075071 lncRNA downstream 289447 10155978 ~ 10157547 (+) True XLOC_036979
TCONS_00074886 lncRNA downstream 696107 10562638 ~ 10564946 (+) True XLOC_036982
TCONS_00075072 lncRNA downstream 870555 10737086 ~ 10760113 (+) True XLOC_036985
TCONS_00072794 mRNA upstream 296291 9502610 ~ 9562644 (+) True XLOC_036974
TCONS_00072793 mRNA upstream 296318 9502610 ~ 9562617 (+) False XLOC_036974
TCONS_00072791 mRNA upstream 357004 9441453 ~ 9501931 (+) False XLOC_036973
TCONS_00072790 mRNA upstream 357004 9441453 ~ 9501931 (+) False XLOC_036973
TCONS_00072792 mRNA upstream 360218 9441553 ~ 9498717 (+) True XLOC_036973
TCONS_00072796 mRNA downstream 60985 9927516 ~ 9950487 (+) False XLOC_036977
TCONS_00072797 mRNA downstream 61093 9927624 ~ 9947454 (+) False XLOC_036977
TCONS_00072799 mRNA downstream 147983 10014514 ~ 10043859 (+) False XLOC_036978
TCONS_00072800 mRNA downstream 148286 10014817 ~ 10043859 (+) True XLOC_036978
TCONS_00072802 mRNA downstream 690613 10557144 ~ 11283197 (+) True XLOC_036981
TCONS_00072788 other upstream 466704 9371502 ~ 9392231 (+) True XLOC_036971
TCONS_00072789 other upstream 480957 9377863 ~ 9377978 (+) True XLOC_036972
TCONS_00072785 other upstream 739688 9118553 ~ 9119247 (+) True XLOC_036969
TCONS_00072784 other upstream 740635 9116996 ~ 9118300 (+) False XLOC_036969
TCONS_00072781 other upstream 887003 8968965 ~ 8971932 (+) True XLOC_036968
TCONS_00072801 other downstream 477333 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072815 other downstream 1581246 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072820 other downstream 2577988 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072821 other downstream 2577993 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072822 other downstream 2961474 12828005 ~ 12828120 (+) True XLOC_036996

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_04505291_04507162.mRNA False 1182 mRNA 0.35 4 CI01000037 4504710 ~ 4507166 (+)