RNA id: CI01000048_00261577_00264226.mRNA


Basic Information

Item Value
RNA id CI01000048_00261577_00264226.mRNA
length 2405
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000048_00261577_00264226
representative False

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 261400 ~ 265542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTAAAGCTTTATTATCAATACCCCCTACTCATACCCCCTACTCATCAAATGTGAGCGAGGGAACAAGGGCATGTGAATCGGCTTCTCCTTTGCCCAGGTGTGAGGTGACATCCAGTTTTTCCAGAGGGGAACCAGACACCTTGTCTCTTGTGGCCTCTGACTCATTAGATAAGGATGAGCAGGATTGATCCAAGGGTGTATAATAATCCTTATTATACACCCTTGGATGAGACGTTGCCTTCACATTCCCAGTTTCAGTGTTCCCATAGTGACGACGGCTCTGGCCTTCAGGATGCTGCTTCTTCAGTGGTATTCTCACTGCACAATACACTCAAGATGGCGCTCACTAAACAGAATTTGCATCCACCTCCTCCTGTGCCAGGCCATTTAAACCTCTTGCGTCGCTCAGCTTCTCAGCATGAGGATTTCCTAATGCCAAGTTGTCCTGACATTACAAATGTTGCGTTTCGGTCCGCTTCCTCATCCAGACCAGATCGCATGGCTCGCATGCTAGCAGCAATGGCTGAGGCCCAGGAAAAGGGCCTTGGCAACATGCCTCCAGTTGAGTCGTGCATTTCTTCACTGCTTGAGTCCTGCACCCGGATATTTTTCGACTCCCAAGTCGTAATAATGCCCTTAGGGGATCCACTCGAAGCTTCAACAGAGACAACACGAATCCGATACCATCACAGTGGTCTTCTTGCCGTCACCCCCCCTAGAAAGTCCGGCGTACGGACTGTGGACCGCATCGTGCTAGCTAGCCTTGCAAGGCAGGCTAGCACCGGATGCGACGAATGCGGCGTCTCCATTGGGCTGCTTAACGTTCGCTCACTCAACAACAAGGCCTCTCTTGTTTATGATCTGGTGAACGATCATAACCCGGAATTTCTGTGCCTGACTGAGACGTGGCAGCTACCGCAGGACTTCGCCGTGTTTACGTCTGTCAGCCTCATGCCTCTGGACGTGGGGGTGGCCTCGCGATACTTTACAACGAGAAATACAAGGTATCCCCACTCCCAGTCAGCGATCACCAATCCTTTGAATCCTCTGCCATACAAATTTCTGGATCTGTTCCCACCATTTTAGCCACCATCTACAGACCACCGAAACCTAACCCAAACTTTTTAAATGAATTCTCGGATTTTATTTCCACCTTATGCTCCCCACCGCTGAAAACTCGGACTGTCACCTTCACCCGCTCTGCACCCTGGTACACACACCAACTAAAAGTTATAGGCCGCCGTCTCGAACGTCTTTCAAGGAAAACCGGACTCTCTGTTCATAAAGACATGTACAATGAACACCATCTGAAATATAAACTAGCTATGTCGAATGCCAAAACTGTCTATTATACCTCTCTGATCCAAACAGCTGAAGGAAACACACAGACTTTGTTCTTCACACTCAACCACATTATACAGTCCTCATGCATTGGCCCCTCTCATATGTACTCCACCGCCAACTGCAATAGATTTATGAACTTTTTTACATCTAAAATAGAAAACATTCACAAACAATTGTCATCTCCTTGCTCTTCCGTCGACTGTAAATTTTGCCTCTCTTCCATCACACCCCCCCTATCATCACTCTCCTCCTTTCAATCACCCACCATCAATGGTATTATGTCCATCATTCAAAAATCAAAATCATCCACTTGTAAACTCGACCCGCTCCCTACAACCCTAGTTAAACTCTGTCTTCTTTCTCTGTCCCCTCTCATCACTGAAATTATACACTCCTCCCTTACCTCTGGTTCTGTTCCATCACCCCTCAAAACTGCAATAATTACTCCCATTCTCAAAAAACCTGGTGCTGATCCAAATAATCTCAACAACTTCCGACCAATTTCTAACCTTCCATATCTCTCAAAAATACTTGAAAAAATAGTTGCCTCACAGATCCATAATCATCTCACTAACAATAACCTCTATGAGCAATTTCAATCTGGCTTCCATCCACTTCACAGCACCGAAACAGCCCTAGTTAAAATCACCAATGACCTTCTGATTGCAGCAGACTCTGGACTACTCACAATACTTATCCTCCTTGACCTAACCGCAGCCTTCGACACAATCTCTCATCACATCCTCCTCAACCGTCTACTCTCCATTGGTATCAATAACACAGCCCTGTCCTGGTTCTCATCTTACTTGTCAGACCACACACAGTTTGTTCAGTTAAAGAATTTTCACTCCGATACTTCCCCAGTCAAATGTGGTATGCCCCAGGGCCCTTGGGCAATATTTTCAAGAAATTTGGTATCAACTTCCACTGCTATGCGGATGACACCCAGCTCTACCACTCCTCTAAACCGACCGCTTCACTCCCTCCCTCATCCCTCCTTGACTGTCTTCAAGAAATTAAAATATGGTTTTCCCACAACTTTCTACAACTTAACGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231992 lncRNA upstream 4857 255979 ~ 256543 (+) True G204390
TU231981 lncRNA upstream 31351 229746 ~ 230049 (+) True G204379
TU231973 lncRNA upstream 37039 216170 ~ 224361 (+) True G204373
TU231796 lncRNA upstream 112123 148680 ~ 149277 (+) True G204231
TU231785 lncRNA upstream 168803 51098 ~ 92597 (+) False G204227
TU232006 lncRNA downstream 3014 268556 ~ 268816 (+) True G204401
TU232007 lncRNA downstream 5432 270974 ~ 271195 (+) True G204402
TU232008 lncRNA downstream 5947 271489 ~ 271703 (+) True G204403
TU232009 lncRNA downstream 8006 273548 ~ 274177 (+) True G204404
TU231995 lncRNA downstream 10847 276389 ~ 277723 (+) False G204392
CI01000048_00149401_00154452.mRNA mRNA upstream 106948 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 148343 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00005001_00005627.mRNA mRNA upstream 255383 5001 ~ 6017 (+) True CI01000048_00005001_00005627
CI01000048_00403297_00404487.mRNA mRNA downstream 137690 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00425103_00519682.mRNA mRNA downstream 159561 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00567988_00568484.mRNA mRNA downstream 302446 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 393480 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 427530 693072 ~ 694348 (+) False CI01000048_00693752_00694265
TU231798 other upstream 197803 63188 ~ 63597 (+) True G204233
TU232014 other downstream 19728 285270 ~ 285747 (+) True G204409
TU232089 other downstream 95483 361025 ~ 361661 (+) True G204472
TU232180 other downstream 395177 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 727913 993455 ~ 993969 (+) False G204824
TU232648 other downstream 948830 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546

Expression Profile