RNA id: TU232014



Basic Information


Item Value
RNA id TU232014
length 478
RNA type TUCP
GC content 0.57
exon number 1
gene id G204409
representative True

Chromosome Information


Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 285270 ~ 285747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCACAGACGCCGCTGGCGTCTATAATCTATCATCCATCTCAATCTCGCTTCTTCCACCCCCCCGTCTGTCTGGGCCCAGATTCAGATCTGAACAGCTAGAGTTTTTCCATGCCCTCCCGATCTCAAACATGGAGAACAGGAAGGAATGGAAGGCTCACGGGAGCTGCAGAGCTATGGACAGAAAGGAACCGCTCGTCGAGCCGTCCGTGTGCGGCCCCTTTCTTAACGCGCCCTCACGGCAGCTGCAGCCTGCCAGAAGCGCGTCCCACAAACTCCAGCAGCTCCGCATATACAGTGCCAGAAGAGCGCTCGCTGCCGGACGCGATGACGTCAAACACGGACGTCATTGTCATCCAACAACTCATCCTCGTCAGCCCCAAGGGGGCTGAGAGAGAGTACACCTCTCTCAAACTTCCCAACGGGCTCACCTGCAAGCCCCATGATTGCAGCCACCGTTTTGCCTCAGCACAAACAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232015 lncRNA upstream 583 284459 ~ 284687 (+) True G204410
TU232000 lncRNA upstream 1815 282650 ~ 283455 (+) True G204395
TU231998 lncRNA upstream 3942 280872 ~ 281328 (+) True G204393
TU232013 lncRNA upstream 4943 279761 ~ 280327 (+) True G204408
TU232012 lncRNA upstream 5527 279347 ~ 279743 (+) True G204407
TU232016 lncRNA downstream 3211 288958 ~ 289242 (+) True G204411
TU232017 lncRNA downstream 3757 289504 ~ 290081 (+) True G204412
TU232019 lncRNA downstream 6236 291983 ~ 292837 (+) True G204414
TU232020 lncRNA downstream 7182 292929 ~ 294016 (+) True G204415
TU232022 lncRNA downstream 8314 294061 ~ 349845 (+) True G204417
CI01000048_00261577_00264226.mRNA mRNA upstream 19728 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 130818 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 172213 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00005001_00005627.mRNA mRNA upstream 279253 5001 ~ 6017 (+) True CI01000048_00005001_00005627
CI01000048_00403297_00404487.mRNA mRNA downstream 117485 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00425103_00519682.mRNA mRNA downstream 139356 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00567988_00568484.mRNA mRNA downstream 282241 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 373275 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 407325 693072 ~ 694348 (+) False CI01000048_00693752_00694265
TU231798 other upstream 221673 63188 ~ 63597 (+) True G204233
TU232089 other downstream 75278 361025 ~ 361661 (+) True G204472
TU232180 other downstream 374972 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 707708 993455 ~ 993969 (+) False G204824
TU232648 other downstream 928625 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232734 other downstream 1097208 1382955 ~ 1383698 (+) True G205026

Expression Profile