RNA id: TU232012


Basic Information

Item Value
RNA id TU232012
length 397
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G204407
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 279347 ~ 279743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTCCTGTACATAGTATGCTATATTAGTATGGTGTTCACTAAGTTTGGTTTGTTAATAACACTGTCTTAATAAATTAAGCCACGTTAAGCGTTCAACTAAGCATTTTCATGTTAAGCATTTTAGAATGTCCCAGTGTCGATATCATTTTCAACTGATTAACATTAGCCTATGAAAACTGGTAAAACCTTTAGGAACTTCGAAAGATAAAACAGCGAAACCTTTAATATTATTTCCAATAATTCCAAACTATGTTCATTTTCCCGATTGAATTGTCACATAGGTTGCAAAAGTGCATTCTGCAAACAGTAAGGTGGAGATCCATGTTGCATTTGTTGGAATTCATTGCTTAAGGTTTGATCATGGCAGATTTAGTCACACAAATAGTACGAGTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232011 lncRNA upstream 278 278833 ~ 279069 (+) True G204406
TU232010 lncRNA upstream 828 278304 ~ 278519 (+) True G204405
TU231997 lncRNA upstream 1445 276432 ~ 277902 (+) True G204392
TU231995 lncRNA upstream 1624 276389 ~ 277723 (+) False G204392
TU231996 lncRNA upstream 1624 276432 ~ 277723 (+) False G204392
TU232013 lncRNA downstream 18 279761 ~ 280327 (+) True G204408
TU231998 lncRNA downstream 1129 280872 ~ 281328 (+) True G204393
TU232000 lncRNA downstream 2907 282650 ~ 283455 (+) True G204395
TU232015 lncRNA downstream 4716 284459 ~ 284687 (+) True G204410
TU232016 lncRNA downstream 9215 288958 ~ 289242 (+) True G204411
CI01000048_00261577_00264226.mRNA mRNA upstream 13805 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 124895 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 166290 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00005001_00005627.mRNA mRNA upstream 273330 5001 ~ 6017 (+) True CI01000048_00005001_00005627
CI01000048_00403297_00404487.mRNA mRNA downstream 123489 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00425103_00519682.mRNA mRNA downstream 145360 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00567988_00568484.mRNA mRNA downstream 288245 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 379279 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 413329 693072 ~ 694348 (+) False CI01000048_00693752_00694265
TU231798 other upstream 215750 63188 ~ 63597 (+) True G204233
TU232014 other downstream 5527 285270 ~ 285747 (+) True G204409
TU232089 other downstream 81282 361025 ~ 361661 (+) True G204472
TU232180 other downstream 380976 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 713712 993455 ~ 993969 (+) False G204824
TU232648 other downstream 934629 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546

Expression Profile