RNA id: TCONS_00000142


Basic Information

Item Value
RNA id TCONS_00000142
length 2185
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_000070
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6307305 ~ 6329292 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGACAGGCACCACCACCACTGCCCGTGAGCATCTCCTGGTGGTGCGGAGGCGCAGCCCACACATGCGCTACACCTTGAGCCCGGAAAACCTCCGCAGCCTTTCGGCGCAGGGTGGATCTGGAGGAGGAGGCTCTAGAGGTGGAGCACCCGAACCCATGGGCCTGCAGCGGGCTAACAGTGACACCGATCTAGTGACATCGGACAGCCGTTCCTCCTTAACAGCATCTACATACCAGTTCACACTAGGGCGAGGGCAAAACCTGGTCATCTCTTGGGACATCAAGGAGGAGGTGGATGCCACTGACTGGATTGGGCTCTATCACATTGATGAGACGTGTCCTGCTAATGTTTGGGACTCGAAGAACCGCGGGGTGAACGGCACTCAGAGAGGGCAGATCGTCTGGAGGCTGGAGCCCGGACCATACTTTATGGAGCCTGAGACCAAAATCTGCTTTAAATATTACCATGGAGTGAGCGGAGCACTGAGGGCCACGACACCCTGCATTACTGTCAAGAACCCTGGAGTTACTGTTGGGGCAGAGGGGCAGGTGGATGGACAGTCTGTCACTGAACACTGCAGGAAATTGGTCAGCTTTACATTATCAGATATCAGGGCTCAGGGTCTGAAGAAGGGCATGTTTTTTAATCCGGACCCGTATCTAAAAATGAGCATCCAACCAGGCAAGAGGAACGGCTTCCCCACGTTCAGCCACCACGGCCAGGAGAGACGAACTTCCATCATATCCAACACCACCAACCCTGTGTGGCACGGAGAGGTAATTGATATTCACTCATGATCCTGGGACGGTTAATGAGGTGTGTTGTTTGTGCTCGGTGTGTCAGAGCTTCACCTCTGCTCTCACTATCCACTGTGAATAACTCTGAAGTTAATGAGGTGTGACCAAATAGGGGTGACTCTGAAACTAGACGCTCTTTAAGTGAGTGAGCTGTACCCTTGAGCAAGGCTTAACCTCAGAAATTAgtgacccttttcacatttatgGAGTTCTCAGATGTGGTAGTCATCATATTTAAGTAAACTTCTGTCCGACTCTGAGCTTACTATCCTAAGTTAGcaacagaaattgagactcatcagaccaggcaactctTTTCCACTCTACTATTGTCCTATTTATTAAAGGAAGAATCCACTTTTTTAGgctaattttacaagtcaccttgagatttaccatttttgaatcgaTCCAGCCAATCAcgtctagcaggagcacttttagcttagcttagcatcattTGTtggatcagattagaccattagcatctcgcctacaaaaaaaaagagttttgataatttaaaACTTGACACTTCTGACATTAAAGGTCCTATgaatgttttttagatgttagtatgagtatttttagtttttaggatatctattaGCTAACACGCACAAAAACTGTGATTATAATTAGTGTTGAAGGGCTCCCCTCAGACTTTGAGATCAGCTGAGTGGATTCAAAtatagtaaaactcaactgtttaactctaggtgcAAAATCTGAGtcgacaaaaaaatgtaaatgattttaaataatttttctataAAACTTGACACTTCTGTAATTAAGACAAACGGAAAGTGAAAAGTTGCTAATTTCTATGTCAATATAgccaggaactatactctcattccaaTAATCaaggagtcaagctttaaataagaaaatgattTAACAgcttttttagaatatttttgagatgctaatggtctaatccgattaaatgatttatgctaagctaagctaaaagtgcttctgccagagccagagattggctgaatggattcaaaacagtaaaactcaacagtttactTCTAGGTGCAAAATCTGAATGCAAATCAAAATATGATTTCTATAAAACTTGACACTTTTATAATTAAAACAGACGGATAGTCAAAAATGGCTATTTTCTAGATCAATGAAGCCAGGAACTATATTCTCATCCCAGTGCAATAatcaaaaaaagttttgttgagatttttgagcgagatgctaatggtctaatctaattcaatgatttatgctaagctaagctaaaacaaatgttttttaaagaggTTTGAGAATTGTCCTAATAACAACTCAacacttctgtaattacatcatGTACAAAGACAGATGGAATAGAAACAGTTGTTAAATTCTTGGAAGATAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183870

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000137 lncRNA upstream 110542 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000135 lncRNA upstream 121773 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000133 lncRNA upstream 127749 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000131 lncRNA upstream 129968 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000128 lncRNA upstream 140751 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00003022 lncRNA downstream 50586 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA downstream 68918 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000148 lncRNA downstream 335741 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 429891 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000153 lncRNA downstream 627621 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000141 mRNA upstream 35159 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000140 mRNA upstream 63327 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000139 mRNA upstream 66787 6225493 ~ 6240518 (+) False XLOC_000069
TCONS_00000136 mRNA upstream 96587 6189949 ~ 6210718 (+) False XLOC_000068
TCONS_00000138 mRNA upstream 96587 6206950 ~ 6210718 (+) True XLOC_000068
TCONS_00000143 mRNA downstream 27767 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000144 mRNA downstream 311145 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000145 mRNA downstream 317237 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000146 mRNA downstream 317280 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000147 mRNA downstream 317324 6646616 ~ 6662821 (+) True XLOC_000075
TCONS_00000134 other upstream 121773 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 805221 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 820143 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 856861 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 888798 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000149 other downstream 458398 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 734545 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2824802 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2825701 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2889356 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

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