Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000143 |
| length | 1350 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | XLOC_000071 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 6357059 ~ 6366066 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016740 | transferase activity | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-101001-3 | Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECW2 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2). |
| ensembl_id | ENSDART00000166620 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000137 | lncRNA | upstream | 160296 | 6189997 ~ 6196763 (+) | False | XLOC_000068 |
| TCONS_00000135 | lncRNA | upstream | 171527 | 6182344 ~ 6185532 (+) | True | XLOC_000067 |
| TCONS_00000133 | lncRNA | upstream | 177503 | 6173484 ~ 6179556 (+) | False | XLOC_000067 |
| TCONS_00000131 | lncRNA | upstream | 179722 | 6171843 ~ 6177337 (+) | False | XLOC_000067 |
| TCONS_00000128 | lncRNA | upstream | 190505 | 6162013 ~ 6166554 (+) | False | XLOC_000067 |
| TCONS_00003022 | lncRNA | downstream | 13812 | 6379878 ~ 6554470 (+) | True | XLOC_000072 |
| TCONS_00003023 | lncRNA | downstream | 32144 | 6398210 ~ 6403223 (+) | True | XLOC_000073 |
| TCONS_00000148 | lncRNA | downstream | 298967 | 6665033 ~ 6668339 (+) | True | XLOC_000076 |
| TCONS_00003024 | lncRNA | downstream | 393117 | 6759183 ~ 6760930 (+) | True | XLOC_000077 |
| TCONS_00000153 | lncRNA | downstream | 590847 | 6956913 ~ 6990027 (+) | True | XLOC_000080 |
| TCONS_00000142 | mRNA | upstream | 27767 | 6307305 ~ 6329292 (+) | True | XLOC_000070 |
| TCONS_00000141 | mRNA | upstream | 84913 | 6243906 ~ 6272146 (+) | True | XLOC_000069 |
| TCONS_00000140 | mRNA | upstream | 113081 | 6226135 ~ 6243978 (+) | False | XLOC_000069 |
| TCONS_00000139 | mRNA | upstream | 116541 | 6225493 ~ 6240518 (+) | False | XLOC_000069 |
| TCONS_00000136 | mRNA | upstream | 146341 | 6189949 ~ 6210718 (+) | False | XLOC_000068 |
| TCONS_00000144 | mRNA | downstream | 274371 | 6640437 ~ 6646356 (+) | True | XLOC_000074 |
| TCONS_00000145 | mRNA | downstream | 280463 | 6646529 ~ 6662926 (+) | False | XLOC_000075 |
| TCONS_00000146 | mRNA | downstream | 280506 | 6646572 ~ 6664123 (+) | False | XLOC_000075 |
| TCONS_00000147 | mRNA | downstream | 280550 | 6646616 ~ 6662821 (+) | True | XLOC_000075 |
| TCONS_00000150 | mRNA | downstream | 451226 | 6817292 ~ 6925103 (+) | False | XLOC_000079 |
| TCONS_00000134 | other | upstream | 171527 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 854975 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000120 | other | upstream | 869897 | 5437390 ~ 5487162 (+) | False | XLOC_000062 |
| TCONS_00000121 | other | upstream | 906615 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000117 | other | upstream | 938552 | 5402534 ~ 5418507 (+) | True | XLOC_000060 |
| TCONS_00000149 | other | downstream | 421624 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000154 | other | downstream | 697771 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000208 | other | downstream | 2788028 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 2788927 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 2852582 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
