RNA id: TCONS_00017716


Basic Information

Item Value
RNA id TCONS_00017716
length 4481
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_008981
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5167690 ~ 5172170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTTGGTGCTGAAAAAGCTTATTCatggtaacattttacaaatgaCATTTAATTCCAGATGCAGCAACAGCTGGAGAATGAATCCAGCGTCTCAGTATTTAAACTCTCCGGTCTGAATGAAACCATGGAGAacagaattgtgtttttttctttcaccgcACTCTTTTATCCTCTGATGGTGTTTTGTAACGTCACTGTAATGTTCACTATAATGTCAAATAAGAAGCTCCATGAGCCAATGTACATGTTTATATGTAATCTTTGTGTAAATGGGCTTTTTGGTACTTCTGGCTTCTATCCTAAATTCTTGTATGATTTATTAGCCCATGATCACGTGATTTCTTATGTTGGGTGTCTGATTCAGATATTTGTCATTTATTCGTCTGCTTTGTGTGACTTTTCAACACTAACGGTGATGGCGTATGACAGGTATGTGGCAATATGTAGACCGCTGGAGTATCATTCAATAATGACAAGCCGTATGATTCTTAAGTGCATCCTTTTCTGTTGGCTGGCTCCATTTGTTTGCATGTCTGTTCTCATCGTGTTAATAGCTAGGCTCACTTTATGTGCCTCCACTATTGAAAAGTTATACTGTGAGATTTGGGCAGTGGCAAAACTTTCATGTTTTTCTACAACTATTAATAACGTGTTTGGGTACATTGTTATTCTTACATATTTTGGACATGCAGTATTGATATTTTGCTCATACATTCACCTGATTAAAAAGTGTATGAAGTCAATAGAAGTCAGACACAAATTTATACAAACGTGTGTGCCGCATCTGCTTTCACTGATTAATGTTACTGCTGCGTTGTTGTTTGATGTGTTGTACAGTCGTTATGGTTCAAGGAATCTGCCACAAAGTGTGCGCAATTTCATGGCTCTTGAATTTCTTCTTGTACCACCTATTTTAAACCCCCTGATTTATGGATTGAATCTGACAGCTGTGCGCCAACAAGTTATAAGACTCTTTTACAAAAAACAAGTGGTAATATCTGACTGAATATTTTTATCATCTACAAGCTATGCTTTTTTTGAACTTTTAAAagttgtacacacacacacaaaatacatcatttgaagaatgttggaaacctgtaaccattgaccagcatagtgtttgttttgccttctATGGATGTCTATGGTTACAGGATTCCAGCATTCTAAAAAATATCTTTTcaacaggacaaaaaaaaaactgttttagaacATTTTAAGAGTTTGTAAATGatggcaatttttattttttggctgtctaaactcggtcctgtagGGTCGGTGTCCttgggtgcgtttccgaaaaccatcgttagcaaggtcgcaagttccgtcgttacaaacatagttcgttgatttcgtgtttcccaaatccatcgttccaacgaacattcgcacaCTGTGTCGCAAACTTATATGCATGCAACTACATCTCTAGAGCTggagttagaagcatagttcctggctgtctAATCCCAGTTATTCTAAATATGCCCTAttcctttaaagggtcacgaaacaccaaaacacattttttgagctgttgacagtcgtatatgtgtcacacactgctaaaaacactattaggacacctatatttcactaaaaagtttaaattggctgtttttgcgttatttcaagcaaattcgtacttccggtttgaaacgaagttttgaagctgcgtcacggctataagataatagcgtgtattgcagcgtgcagactggacgtctgtgctagagtgtgtcttattatgtcttacagtgtgatgcattaatgcatgagtatggcttggttcaaaccaatcagcacgctttattgtgcaacttcattaatattctttacggtcacagtgtttagacgacagagacgccacgttgtgttggcaaaacaagcgtgaagtgttgcttttatagtttgctgcagttaagttttgttttcattttctctctgagctcagctggactcacgtgtggattaacagtgtacgcgacgcgggacaacaataacttacgtgtctaaggaggcacattgtttacctgagagctgttctcatctgcaaacgctgagatccggattcgcttgtagtctcctcttaataaagacgcggctctagttgctggtgattgtcctgtctctacaaatttggtaagtgagcgtccagtgctctttgtttattcagtttgttcgtatcgaacaaactattgcaccgaatgtaaacatgttagcactacaaccaaactttaacctcgtgtagggttttcaccgcattttgtgaccgggataacacacgcggctttctgacgctacctgccgagtgcatctaagtttccgggaaatgctgaggttgtttttttctctcattcgccgtgcggtatcaaacattgcataaaaaaatacacgcttagagcagtttctcgaatcaaatatctcgtttgtcgcgaggggcatgaatgaattccctgaatgaaagagccaaactgcagttaaagtccactatttaataatttggcaaataattcgactacagatgtccatgtaaacacagtccctttctcccctgtgtgtgtttgtgtgtgtgtgtgtgttttgactctgaaactcagcgtgcccaaatagacactcccactttagttcctccgacactcccccctaaacagagctggacacgcccacttttcagactttttccaaagtagagttgtgaaaacactctgctgaaatgaggggtttcatggccctttaaaacattctaacgtttaaacttggaatgattttttttaaaagcataaaagtcatctctctttggtgtaatttgctttcaaagtatttttacagttcagttttagcgattttcatgtttacaattgtgctctctttgcagtgcactttgaaaatatTGATGTCATTTcaaacacagccgtggctcatgacgaaagttATAGGTGacttatttaaaagcagaatttatgttcATCTCTAAAGCTTGTGAGagcaaaaaacatagcatatgttaatgctttGAAATTATAGTAGgtcatttattaagtatctgtactgtatatgacatgggcctgttggttagaacatttctgcagtggtttacatgtgtcaaattgtaaaagtagacctttcaaaaaataaaaaataaatacacaatatcCTCCTTGATAATCATCatcctcattattattaatattattattaaagcaggatttttttcattttctaataaaaaataaatattaaatttcattttttaataaatcgcttcattattgatttatttatgatttataaatgatattagaatacgtgtaaGCTTTTGTaattgattttatgttttagaatagaatatgtaatgttctcaataatatttgtaaaggaaacttTGGTCCTATATGacccatttacatatatttcaattaataaaaaaaatgagtgcatgtttttaccaaaactaattttggatttttttgcGTATGCATACAAAAAcgatataatttgcacaaataaaaatGGGGTtctcccagcctgatctcacaaggaaacataagtattttacaatttgacagtttagtggctaatttgagtTCAGTCAtttgaaaatgtacgattttaaaaaggaggtgtggcacccaaccccacccttaaccgtcattgggtgatgagcaaatcttagtaaactgtacgaattagatcgtacaaattcatatgaattagccactgaatcaaaaagttacaaattgctgtgagattgcattggttcttctctaaagaagttgtaactccaccccgtttagagcaccATTATGagcattttacgttataacttacgtggttcaaatgatggatctgcaacagagagactacaggttttgggaaacacttgtcactacatcgttcttttcgcaaacgatgcatcgtactatgattaTCCGcgaattaagctgcggtcacattagagtttgagcatgccaTATTCTGTGAATCATGCttaaaggggcgggattaaacaagcttattagatattttaaaaagcgagcgattgctccatattttaaattgttgtccagagaagtcatgttttgatcctcgactggtctcacacagtcaatgatgcgatttcgcaggtcagagttcatcaagttggaactttgcaccgcagcaacctgcgaaacttgacgcatgatgctgcgtttccggtctgatgcattttCTTGCGTAtgagtggaagtctatggggagaaaagcccagtgtgaccgcagctttatgtcattgtttgggaaacgcaccccaggagagtttagctttaactctaatcaaacacacctgaaccagctattTAAGCCATTACTAGATATaatagaaacttcctggcaggtgtgttgaagcaaaatggagctaaactatgcaggacaccggccctccatcaccgagtttggacacccctccTTTAAGGCATGGCTCTTGAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-103 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000062830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 681823 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 722092 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 731259 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 992817 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 1406733 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018810 lncRNA upstream 30081 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 43638 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 615016 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 622793 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 726240 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017715 mRNA downstream 2677 5162274 ~ 5165013 (-) True XLOC_008980
TCONS_00017714 mRNA downstream 10118 5155137 ~ 5157572 (-) True XLOC_008979
TCONS_00017713 mRNA downstream 151651 5011080 ~ 5016039 (-) True XLOC_008978
TCONS_00017712 mRNA downstream 198165 4964771 ~ 4969525 (-) True XLOC_008977
TCONS_00017711 mRNA downstream 200200 4957841 ~ 4967490 (-) False XLOC_008977
TCONS_00017717 mRNA upstream 3423 5175593 ~ 5178899 (-) True XLOC_008982
TCONS_00017718 mRNA upstream 10684 5182854 ~ 5184186 (-) True XLOC_008983
TCONS_00017719 mRNA upstream 17238 5189408 ~ 5191672 (-) True XLOC_008984
TCONS_00017720 mRNA upstream 24545 5196715 ~ 5198191 (-) True XLOC_008985
TCONS_00017721 mRNA upstream 29884 5202054 ~ 5203371 (-) False XLOC_008986
TCONS_00017702 other downstream 685460 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 685543 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 802418 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1063164 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2431192 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 210892 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 617168 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1754848 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1766718 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1776501 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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