Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017772 |
| length | 892 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.43 |
| exon number | 7 |
| gene id | XLOC_009013 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 6948644 ~ 6966245 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0005763 | mitochondrial small ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070615-31 | Predicted to be a structural constituent of ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 5 and ovarian dysgenesis 7. Orthologous to human MRPS22 (mitochondrial ribosomal protein S22). |
| ensembl_id | ENSDART00000167815 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019119 | lncRNA | downstream | 1046689 | 5898410 ~ 5901982 (-) | False | XLOC_009008 |
| TCONS_00017759 | lncRNA | downstream | 1047186 | 5898410 ~ 5901485 (-) | False | XLOC_009008 |
| TCONS_00017758 | lncRNA | downstream | 1047193 | 5898904 ~ 5901478 (-) | False | XLOC_009008 |
| TCONS_00017760 | lncRNA | downstream | 1047193 | 5899186 ~ 5901478 (-) | True | XLOC_009008 |
| TCONS_00017753 | lncRNA | downstream | 1150753 | 5794963 ~ 5797918 (-) | True | XLOC_009005 |
| TCONS_00017775 | lncRNA | upstream | 2142 | 6968381 ~ 6976921 (-) | False | XLOC_009014 |
| TCONS_00017779 | lncRNA | upstream | 65858 | 7032097 ~ 7034722 (-) | True | XLOC_009016 |
| TCONS_00019120 | lncRNA | upstream | 98229 | 7064468 ~ 7065313 (-) | True | XLOC_009017 |
| TCONS_00019121 | lncRNA | upstream | 1383790 | 8350029 ~ 8394601 (-) | True | XLOC_009023 |
| TCONS_00019122 | lncRNA | upstream | 1633352 | 8599591 ~ 8602094 (-) | True | XLOC_009025 |
| TCONS_00017768 | mRNA | downstream | 2385 | 6926987 ~ 6946286 (-) | False | XLOC_009012 |
| TCONS_00017765 | mRNA | downstream | 85354 | 6838039 ~ 6863317 (-) | False | XLOC_009011 |
| TCONS_00017766 | mRNA | downstream | 85354 | 6838264 ~ 6863317 (-) | False | XLOC_009011 |
| TCONS_00017767 | mRNA | downstream | 85521 | 6854681 ~ 6863150 (-) | True | XLOC_009011 |
| TCONS_00017764 | mRNA | downstream | 297678 | 6515400 ~ 6650993 (-) | True | XLOC_009010 |
| TCONS_00017776 | mRNA | upstream | 2392 | 6968631 ~ 6976921 (-) | False | XLOC_009014 |
| TCONS_00017777 | mRNA | upstream | 3536 | 6969775 ~ 6976851 (-) | True | XLOC_009014 |
| TCONS_00017780 | mRNA | upstream | 333517 | 7299756 ~ 7337537 (-) | False | XLOC_009018 |
| TCONS_00017781 | mRNA | upstream | 348368 | 7314607 ~ 7337148 (-) | True | XLOC_009018 |
| TCONS_00017782 | mRNA | upstream | 418281 | 7384520 ~ 7598294 (-) | False | XLOC_009019 |
| TCONS_00017769 | other | downstream | 2580 | 6927018 ~ 6946091 (-) | False | XLOC_009012 |
| TCONS_00017770 | other | downstream | 7744 | 6938888 ~ 6940927 (-) | True | XLOC_009012 |
| TCONS_00017752 | other | downstream | 1153256 | 5789338 ~ 5795415 (-) | False | XLOC_009005 |
| TCONS_00017735 | other | downstream | 1565491 | 5383062 ~ 5383180 (-) | True | XLOC_008997 |
| TCONS_00017702 | other | downstream | 2466441 | 4435465 ~ 4482230 (-) | False | XLOC_008974 |
| TCONS_00017778 | other | upstream | 42583 | 7008822 ~ 7008938 (-) | True | XLOC_009015 |
| TCONS_00017797 | other | upstream | 1873263 | 8839502 ~ 8856379 (-) | True | XLOC_009027 |
| TCONS_00017798 | other | upstream | 2021404 | 8987643 ~ 8987759 (-) | True | XLOC_009028 |
| TCONS_00017810 | other | upstream | 2635398 | 9601637 ~ 9619953 (-) | False | XLOC_009037 |
| TCONS_00017819 | other | upstream | 3219815 | 10186054 ~ 10186169 (-) | True | XLOC_009039 |
